PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g07790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 572aa    MW: 60152.9 Da    PI: 4.6271
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g07790.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.42.8e-23301641127
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknr.atksg 81 
                       lppG+ F+Pt ee +++yL++ ++gk++++ e+  ++ +d+y   P  L++        +   +w+f ++r+++++     +kr++r +++ g
  LOC_Os12g07790.1  30 LPPGVYFNPTREEAMHHYLNRWIAGKTIPEMEAgfVAGADVYGDGPDALRRrhrpgYWCNCVYKWFFLCHRKRQSSrrttGNKRAERvVAAGG 122
                       79*************************777664459999**********8534554222245599****999988744423458888667799 PP

               NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                       +Wk     k+vl  +g   g +++L fy  ++++++kt+W+m+ey+
  LOC_Os12g07790.1 123 RWKVEQG-KKVLG-GGGGGGERDSLGFY--SSNSTKKTSWIMEEYT 164
                       ***6544.68888.88899*********..556667*********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-2226191IPR003441NAC domain
PROSITE profilePS5100529.40930191IPR003441NAC domain
PfamPF023659.2E-1631164IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MDVDPPPPLP PPPPPPPPPA TPQQNKAVEL PPGVYFNPTR EEAMHHYLNR WIAGKTIPEM  60
EAGFVAGADV YGDGPDALRR RHRPGYWCNC VYKWFFLCHR KRQSSRRTTG NKRAERVVAA  120
GGRWKVEQGK KVLGGGGGGG ERDSLGFYSS NSTKKTSWIM EEYTSSAADG AAAARGEEDR  180
MEPVLCKIYL SPRAPAGEKR ALFGEDGVAV GPDGRKRNAR VTVLATLFDD VAALLGQPVA  240
APPLPAPGEQ LGHGHGHFDD VAARFGQVAV AALPASGDLG HGDFDDDAAA LLGQVAMAPA  300
PAPGHHQQGY VVAEAPLPES GYLGHYHHDG HLAQAAAAPE QDHYLGYHSH DAHVVDAEAT  360
PEQGYHDDAH VAVAPAPEQG DLGHDQGHLA AALTPEECGE IVGAYEFHPE MVQMLSIGFA  420
APDEQLLPQL LDPTGGGYDM ASSAIAAVGD VNAYAAAAPT PRIRPNAAEA MAATATAETM  480
PPPLDAVAAE LSAPPRGLPP ELAFSALPSV QQEPSCDDGD NFGELVAEAM PPLIGENAGV  540
DAGSDEPLPD LAGIMTELDF GHDFFSNQHR E*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QWY5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g07790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g07790
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL7323760.0AL732376.2 Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ2QWY50.0Q2QWY5_ORYSJ; No apical meristem protein
STRINGLOC_Os12g07790.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1453134
MonocotsOGMP135701724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.14e-12NAC domain containing protein 63
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]