PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g07480.1
Common NameLOC9271589, Os12g0173300, Os12g0173333, OSNPB_120173300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 419aa    MW: 42526.3 Da    PI: 6.1836
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g07480.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP136.62.2e-421042493125
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg 88 
                        +k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++       + ++s ssasn++ +
  LOC_Os12g07480.1 104 LAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSslnisirSGAASASSASNPNRA 196
                       689*****************************************************************8876666666556666666666666 PP

               TCP  89 kaaksaa.kskksqksaasalnlakesr...............akarararer 125
                       +  ++ a +++++q++ +++l ++++                 a a +r+r+r
  LOC_Os12g07480.1 197 SPFPALAlHPHHQQHDVSAMLGYHHHLLpppqqqqespqdpggAGAFMRKRYR 249
                       66666666888888888888888875445666666666666555555554444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.2E-38109220IPR005333Transcription factor, TCP
PROSITE profilePS5136928.705109163IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MDHGGGGGGG GAAPSSSNIG GGSGGGGGGG GRENHPHHPF YYSGPAAAAA AAAAAQQQQQ  60
TFMGALAITP VVAEQPQGSS GGGEKKVVAP TTPAAAGAAA TTTLAKRPSK DRHTKVDGRG  120
RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI  180
RSGAASASSA SNPNRASPFP ALALHPHHQQ HDVSAMLGYH HHLLPPPQQQ QESPQDPGGA  240
GAFMRKRYRE DLFKEDDDRQ DPSAPKAREQ QPTTPQAAAA AAAAAAMWAV APNTAAPGGA  300
FWMLPVSASS AAAARPTEQP MWSFAGGGGG AATVQAPLQF MSTRVNYPGS AGAGMSDTNL  360
GMLAALNAYN RGGAGDQQPQ QQPEMDQQGR NDDDDDDGDD SGDEDNGGAN NNNNNSSQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.984770.0callus| leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QX18
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g07480.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g07480
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL7139330.0AL713933.6 Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618822.10.0PREDICTED: transcription factor PCF3-like
SwissprotQ53PH23e-76PCF3_ORYSJ; Transcription factor PCF3
TrEMBLQ2QX180.0Q2QX18_ORYSJ; Os12g0173300 protein
STRINGLOC_Os12g07480.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP45911023
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-44TCP family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]