PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g07280.1
Common NameLOC4351624, Os12g0170400, STAR3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 466aa    MW: 50597.7 Da    PI: 5.846
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g07280.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.84.9e-07230251223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C++Cgk F+r  nL+ H+r H
  LOC_Os12g07280.1 230 FCGICGKGFKRDANLRMHMRGH 251
                       6*******************98 PP

2zf-C2H210.70.0017319342123
                       EEETTTT.EEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                       ++C+ Cg k+Fs   +Lk+H + +
  LOC_Os12g07280.1 319 HVCGRCGaKRFSVMADLKTHEKHC 342
                       79******************9876 PP

3zf-C2H210.90.0014351365620
                       TTEEESSHHHHHHHH CS
           zf-C2H2   6 CgksFsrksnLkrHi 20 
                       Cg+sFsrk+ L  H 
  LOC_Os12g07280.1 351 CGTSFSRKDKLFAHV 365
                       **************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.03E-5228251No hitNo description
SMARTSM003550.0091229251IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.759229256IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5230255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280231251IPR007087Zinc finger, C2H2
SMARTSM0035589281314IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.03E-5314340No hitNo description
SMARTSM0035547319341IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010044Biological Processresponse to aluminum ion
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MDRDQMTNTM RDQAANLTSM NPLFYPFMAD DALLGMAPPP PQQLLPSVSI QHMDWSPDTM  60
LDNLTFIEEK IRQVKDVIRS MAGRRASSSS AATPEQQLVN ADLTCLIVQL ISTAGSLLPS  120
LKNSSFLSRT TPPPAAAAGA AQAVSLAAGE SSSSARNNET NREDEEEQMG SPDYDELFKV  180
WTNGGAMDEC VGAAGDEQDA RENPAAAAEE EKYEVLQLEE DEILAPHTHF CGICGKGFKR  240
DANLRMHMRG HGDEYKSAAA LAKPPPPPEG EEQPPQPERR YSCPHAGCKR NRMHASFQPL  300
KTILCVKNHY KRSHCEKRHV CGRCGAKRFS VMADLKTHEK HCGRDRWLCS CGTSFSRKDK  360
LFAHVALFQG HAPALPPPPP PPTSGRRRHK QEEPEFTWGG GGGNEFLDVK GIAGVGSGSG  420
GGDEFFSAGS FGAMDFGFGQ LDASLAMLLP SEQFAGDHQE ENGDK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.505560.0callus| flower| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379914490.0
Expression AtlasQ2QX40-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots. {ECO:0000269|PubMed:19880795}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that regulates the expression of genes involved in aluminum (Al) tolerance. Binds to the promoter of STAR1 and regulates transcript expression of STAR1 STAR2 and ART1 required for Al tolerance. {ECO:0000269|PubMed:19880795}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g07280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Disruption Phenotype ? help Back to Top
Source Description
UniProtDISRUPTION PHENOTYPE: No visible phenotype under normal growth condition, but strong inhibition of root elongation when grown in the presence of Al or on acidic soil. {ECO:0000269|PubMed:19880795}.
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g07280
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB3798460.0AB379846.1 Oryza sativa Japonica Group STAR3 mRNA for C2H2-type domain containing zinc finger protein, complete cds.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL9548250.0AL954825.3 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7317610.0AL731761.3 Oryza sativa chromosome 12, . BAC OJ1119_B11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620753.10.0PREDICTED: zinc finger protein STAR3
SwissprotQ2QX400.0ART1_ORYSJ; Zinc finger protein STAR3
TrEMBLI1R4F00.0I1R4F0_ORYGL; Uncharacterized protein
STRINGLOC_Os12g07280.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8301663
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.33e-79C2H2 family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Yamaji N, et al.
    A zinc finger transcription factor ART1 regulates multiple genes implicated in aluminum tolerance in rice.
    Plant Cell, 2009. 21(10): p. 3339-49
    [PMID:19880795]