PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g06640.1
Common NameLOC4351583, Os12g0163500, OsJ_35324, OSNPB_120163500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 433aa    MW: 48773.1 Da    PI: 6.5865
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g06640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix81.98.8e-26108203185
          trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 
                       +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++ +++++++
  LOC_Os12g06640.1 108 KWTDSMVKLLITAVSYTGEDPGADSgagkrnsaimQKKGKWKAISKVMGERGCSVSPQQCEDKFNDLNKRYKRLTDILGRGTaCKIVENHALL 200
                       7*********************9877778889999**********************************************549999999998 PP

          trihelix  83 dql 85 
                       d +
  LOC_Os12g06640.1 201 DCM 203
                       877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.8E-20106230No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MEGNNLPSGS LMRSNSGQMH APNPGKQGFD HTQMPGNLSM HVNQSTDSDH LSEFQFGELG  60
KVDHHHHHHH RQHAKNGMSD DEEHGVNEDA TDSQSGKGKK GAAWQRMKWT DSMVKLLITA  120
VSYTGEDPGA DSGAGKRNSA IMQKKGKWKA ISKVMGERGC SVSPQQCEDK FNDLNKRYKR  180
LTDILGRGTA CKIVENHALL DCMSNLSDKM KDDARKILSS KHLFYEEMCS YHNNNRVSLP  240
EDPALQRSLQ LALRCKDEHD LRRGTSGDAD EDDQSVDSDS EEENDEENYT LQGDKSALPM  300
HKRLRLMTDQ EDVGFGNSSS SHGCSRRSDS HGISLDINKA FPDGTNLALA QKDLATQSAD  360
LEEQRLQIEV QAVYLAKQRL KWERFSKNKD RELEQMRLEN EKMRLENKRL ELEVRHKELE  420
LELKQKGSGN HA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.103610.0callus| flower| leaf| panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329883310.0
Expression AtlasQ2QXB1-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g06640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g06640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL7139360.0AL713936.4 Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAK1031220.0AK103122.1 Oryza sativa Japonica Group cDNA clone:J033119K12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619923.10.0PREDICTED: uncharacterized protein LOC4351583
RefseqXP_015619924.10.0PREDICTED: uncharacterized protein LOC4351583
TrEMBLA0A0E0RE650.0A0A0E0RE65_ORYRU; Uncharacterized protein
TrEMBLQ2QXB10.0Q2QXB1_ORYSJ; Expressed protein
STRINGLOC_Os12g06640.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-101sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]