PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g06080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 278aa    MW: 31078.6 Da    PI: 7.7821
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g06080.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3962.5e-3036129188
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                       f+k ltpsdv+k++rlv+pk++ae++     g + e++  l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++  
  LOC_Os12g06080.1  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplggGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGl 128
                       99****************************9555568889************************************************87654 PP

                       S CS
                B3  88 s 88 
                        
  LOC_Os12g06080.1 129 G 129
                       3 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-4131145IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.19E-3033127IPR015300DNA-binding pseudobarrel domain
CDDcd100171.19E-2835127No hitNo description
PROSITE profilePS5086313.63436142IPR003340B3 DNA binding domain
SMARTSM010191.8E-2236141IPR003340B3 DNA binding domain
PfamPF023622.7E-2736140IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV  120
HFERVRGLGA ADRLFIGCRR RGESAPAPPP AVRVTPQPPA LNGGEQQPWS PMCYSTSGSS  180
YDPTSPANSY AYHRSVDQDH SDILHAGESQ READAKSSSA ASAPPPSRRL RLFGVNLDCG  240
PEPEADQATA MYGYMHHQSP YAAVSTVPNY WSVFFQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-443315111128DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.58750.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329958020.0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g06080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g06080
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL9287580.0AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618154.10.0PREDICTED: B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI01e-135Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLA0A0E0RE100.0A0A0E0RE10_ORYRU; Uncharacterized protein
STRINGLOC_Os12g06080.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.29e-53B3 family protein