PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g06010.1
Common NameOs12g0156200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 1765aa    MW: 198103 Da    PI: 8.9613
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g06010.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_122.42.7e-0716641710147
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1    1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkk 47  
                        eke kr rr   NRe+Ar   +R++a  +eL++kv+ L+++N+++kk
  LOC_Os12g06010.1 1664 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSTQNESMKK 1710
                        89*****************************************9995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF562191.31E-28178357IPR005135Endonuclease/exonuclease/phosphatase
PfamPF033721.6E-7181351IPR005135Endonuclease/exonuclease/phosphatase
Gene3DG3DSA:3.60.10.105.2E-13201358IPR005135Endonuclease/exonuclease/phosphatase
SuperFamilySSF566725.11E-18510852No hitNo description
PROSITE profilePS5087814.677604886IPR000477Reverse transcriptase domain
CDDcd016501.26E-60617885No hitNo description
PfamPF000787.1E-39623855IPR000477Reverse transcriptase domain
PfamPF139662.3E-2111421237IPR026960Reverse transcriptase zinc-binding domain
SuperFamilySSF530981.64E-1213571468IPR012337Ribonuclease H-like domain
Gene3DG3DSA:3.30.420.106.5E-513601438IPR012337Ribonuclease H-like domain
CDDcd062221.44E-2013611459No hitNo description
PfamPF134563.1E-2613621460No hitNo description
Gene3DG3DSA:1.20.5.1704.3E-516611710No hitNo description
SMARTSM003380.001816641720IPR004827Basic-leucine zipper domain
CDDcd147026.29E-1116691710No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 1765 aa     Download sequence    Send to blast
MLRDMNDQPT RVDAFDGFDI REGKGEDSID SQLADQTNML HVSEVASLGQ KKGKDLVSKE  60
TSSIPSMEMI PAIRDLNVQQ VSFGDGSTEE FGSPTKRKAL PTTKSSGIVQ QAVLEYGQRG  120
AEETASSTRA MKRLKKGVEA NTGVEDMEAT SLGAAGKLAG PMRGQSVEKM SRLRGRLGLR  180
GFTGVSSEGM SGGLALYWDE SVSVDVKDIN KRYIDAYVQL SPEEPQWHVT FVYGEPRVEN  240
RHRMWSLLRT IHQSSSLPWA VIGDFNETMW QFEHFSRTPR GEPQMQDFRD VLQDCELHDL  300
GFKGVPHTYD NKREGWRNVK VRLDRVVADD KWRDIYSTAQ VVHLVSPCSD HCPILLNLVV  360
KDPHQLRQKC LHYEIVWERE PEATQVIEEA WVVAGEKADL GDINKALAKV MTALRSWSRA  420
KVKNVGRELE KARKKLAELI ESNADRTVIR NATDHMNELL YREEMLWLQR SRVNWLKDED  480
RNTKFFHSRA VWRAKKNKIS KLRDANETVH SSTMKLESMA TEYFQDVYTA DPNLNPETVT  540
RLIQEKVTDI MNEKLCEDFT EDEISQAIFQ IGPLKSPGPD GFPARFYQRN WGTIKADIIG  600
AVRRFFQTGL MPEGVNDTAI VLIPKKEQPV DLRDFRPISL CNVVYKVVSK CLVNRLRPIL  660
DDLVSVEQSA FVQGRMITDN ALLAFECFHA MQKNKKANHA ACAYKLDLSK AYDRVDWRFL  720
EMAMNKLGFA RRWVNWIMKC VTSVRYMVKF NGTLLQSFAP TRGLRQGDPL LPFLFLFVAD  780
GLSLLLKEKV AQNSLTPFKV CRAAPGISHL LFADDTLLFF KAHQREAEVV KEVLSSYAMG  840
TGQLINPAKC SILMGGASTP AVSEAISEIL QVERDRFEDR YLGFPTPEGR MHKGRFQSLQ  900
AKIWKRVIQW GENHLSTGGK EVLIKAVIQA IPVYVMGIFK LPESVIDDLT KLTKNFWWDS  960
MNGQRKTHWK AWDSLTKPKS LGGLGFRDYR LFNQALLARQ AWRLITYPDS LCARVLKAKY  1020
FPHGSLIDTS FGSNSSPAWR SIEYGLDLLK KGIIWRVGNG NSIRIWRDSW LPRDHSRRPI  1080
TGKANCRLKW VSDLITEDGS WDVPKIHQYF HNLDAEVILN ICISSRSEED FIAWHPDKNG  1140
MFSVRSAYRL AAQLVNIEES SSSGTNNINK AWEMIWKCKV PQKVKIFAWR VASNCLATMV  1200
NKKKRKLEQS DMCQICDREN EDDAHALCRC IQASQLWSCM HKSGSVSVDI KASVLGRFWL  1260
FDCLEKIPEY EQAMFLMTLW RNWYVRNELI HGKSAPPTET SQRFIQSYVD LLFQIRQAPQ  1320
ADLVKGKHVV RTVPLKGGPK YRVLNNHQPC WERPKDGWMK LNVDGSFDAS SGKGGLGMIL  1380
RNSAGDIIFT SCKPLERCNN PLESELRACV EGLKLAIHWT LLPIQVETDC ASVVQLLQGI  1440
GRDFSVLANI IHEARHLLQT PSRTNTKVTT QKQTLRPNAT AHCMPTDRPT EPGPRGGPGG  1500
HPSRRFRPPS HPLTRGPHTH AAPPLAAALA CPHGEQPDAK ILPAATPPMS DDHSGGGGEQ  1560
RQCRRGFAVD VVELGAALAL ADMAGAAVKP AMQLQLQPTA AQEEDEEMAT TRLSLQLGNN  1620
VGSIIQSSSC SSSGSSAGLP APPPPPPPAT AYGTKPLHML TEEEKEAKRL RRVLANRESA  1680
RQTILRRQAI RDELARKVAD LSTQNESMKK LKLAINSNDV VFGGAGEGDS DAGVPLTEGD  1740
KQAAQRTGTA SSFAFLVLIN LLVV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
112011206KKKRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.22350.0callus
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO334658900.0
Expression AtlasQ2QXH7-
Cis-element ? helpBack to Top
SourceLink
PlantRegMapLOC_Os12g06010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g06010
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3331860.0AY333186.1 Oryza sativa (japonica cultivar-group) bZIP-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619146.10.0PREDICTED: uncharacterized protein LOC107279625
TrEMBLQ2QXH70.0Q2QXH7_ORYSJ; Os12g0156200 protein
STRINGLOC_Os12g06010.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.12e-07bZIP family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]