PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g05990.1
Common NameLOC4351545, Os12g0156100, OSNPB_120156100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 308aa    MW: 32505.3 Da    PI: 7.1786
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g05990.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1301.8e-40191542128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                       +pGfrF Pt+eel+ +yL+++++g++  ++++vi+ vd+y ++P++L +    ++++++++w+fF++r++++ +g r+ r+t sgyWkatg+ 
  LOC_Os12g05990.1  19 TPGFRFYPTEEELIGFYLRHRLAGTRaDDVARVIPVVDVYGYHPSQLAAmagvATAGDREQWFFFCPRAERELHGGRPARTTPSGYWKATGSP 111
                       69**********************995666778**************8445544444666********************************* PP

               NAM  90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                         v+s+      +++g+k+t+vfy+grap+g+kt+W m+ey++
  LOC_Os12g05990.1 112 SFVFSSsaaaAARVIGVKRTMVFYQGRAPSGTKTRWKMNEYKA 154
                       ****9877666667***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-4316198IPR003441NAC domain
PROSITE profilePS5100544.20918200IPR003441NAC domain
PfamPF023651.5E-2220153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009071anatomyanther wall tapetum
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MVMSGGGGGA RIVSDPAATP GFRFYPTEEE LIGFYLRHRL AGTRADDVAR VIPVVDVYGY  60
HPSQLAAMAG VATAGDREQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSFVFSSSAA  120
AAARVIGVKR TMVFYQGRAP SGTKTRWKMN EYKAVAAAAA DDDHNAAGVA VQLPPMAPPP  180
SSSACVRLRN ELSVCRVYVS TGTLRSFDRR PLDAPPVISH HQPQLQQQQR QLPSSAAAAA  240
TNGNLIALAG GYECSHDSSG GSSEDAAIDW SSLITAATDS ATAAVDFSFN DDIDFSPAAV  300
GPWAPQL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B4e-282015519143NAC domain-containing protein 19
4dul_A4e-282015519143NAC domain-containing protein 19
1ut7_B4e-282015519143NO APICAL MERISTEM PROTEIN
1ut7_A4e-282015519143NO APICAL MERISTEM PROTEIN
1ut4_B4e-282015519143NO APICAL MERISTEM PROTEIN
1ut4_A4e-282015519143NO APICAL MERISTEM PROTEIN
3swp_D5e-282015522146NAC domain-containing protein 19
3swp_C5e-282015522146NAC domain-containing protein 19
3swp_B5e-282015522146NAC domain-containing protein 19
3swp_A5e-282015522146NAC domain-containing protein 19
3swm_D5e-282015522146NAC domain-containing protein 19
3swm_C5e-282015522146NAC domain-containing protein 19
3swm_B5e-282015522146NAC domain-containing protein 19
3swm_A5e-282015522146NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.193690.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329947430.0
Expression AtlasQ2QXH9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g05990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g05990
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL9546320.0AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9287580.0AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankKP0331900.0KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619441.10.0PREDICTED: NAC domain-containing protein 90
SwissprotQ9FMR37e-68NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0C5D1U40.0A0A0C5D1U4_ORYSA; Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA
TrEMBLA2ZI840.0A2ZI84_ORYSI; Putative uncharacterized protein
TrEMBLQ2QXH90.0Q2QXH9_ORYSJ; No apical meristem protein, expressed
STRINGBGIOSGA037019-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os12g05990.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP22781136
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.12e-62NAC domain containing protein 90
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]