PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g05940.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 588aa    MW: 68187.9 Da    PI: 6.7644
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g05940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.71.1e-2411100190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +f+ +Y+ ++GF+vrk++++k++ ++++t+++fvCsk+g+r ++k++ + ++++raetr+gC+ ++ +++++ ++k+e+++le  HnH l+
  LOC_Os12g05940.1  11 NFWVTYGGRMGFDVRKKYHNKNQVTQKTTSARFVCSKQGFRGKDKRD-NLTKHPRAETRIGCNVRMGLTLNRvNEKYEISDLEVMHNHILQ 100
                       69******************************************999.99**************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1811100IPR004330FAR1 DNA binding domain
PfamPF105514.1E-26220314IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MAFSDTEEAW NFWVTYGGRM GFDVRKKYHN KNQVTQKTTS ARFVCSKQGF RGKDKRDNLT  60
KHPRAETRIG CNVRMGLTLN RVNEKYEISD LEVMHNHILQ TPETSHLMPS QRKITEVQAF  120
EIEMADDTSI QPRIAHELAA RHVGGSSNLG YTCLDQQNYL RTKRQKELKY GEAGSLLNYF  180
KNKAIDNPSF HYAVKLDSEE QITNIFWAEM IIDYAHFGDV VTFDTTFGTN KESWPFGVFV  240
GFNHFRETVV FGAALMYDET CDSFCWLFDA FLSCHNHKHP QTIYTDQDVA MGKAITEVFT  300
ETRHGLCTFH IMQNANKHIN RQKTSDGSNV LADFSACMCE HEDVEKFEEV FADMRTKVRK  360
GTWLDSVYKL KEKWAECFMK NAYTLGMRST QLSEGLNSDL KEYLNCELNI VRFFHHFDRV  420
VQGKRDKEIK SEYESRKKLP RILMRIPMLL QTNFEECFAF VDNALETLGQ QVEQMVEVNT  480
NIQSNLETEF EIPENVSQAI GLKKKETRCS TSKRKKNWVD KLHKKRKKSL RYAKNGNEVA  540
HPEPLEEDIL ENSTKESHQD FEFLGSYTQL LAGDSDGYEL YSEGFHQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1513527RKKNWVDKLHKKRKK
2523527KKRKK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QXI4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g05940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g05940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankAL9546320.0AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL9287580.0AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619144.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ2QXI40.0Q2QXI4_ORYSJ; Transposon protein, putative, unclassified
STRINGLOC_Os12g05940.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-78FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]