PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g03660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 774aa    MW: 89683.1 Da    PI: 8.0952
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g03660.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.25.7e-2336125190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +f+ +Y+ ++GF+vr+++++ks+ ++ +t+++fvCs++g+r+eekk  + ++r+ra+trtgC+ ++ +++ + + +++v++l  eHnH l+
  LOC_Os12g03660.1  36 DFWVKYGGRIGFDVRNNYTNKSDLDQLVTSSRFVCSNQGSRAEEKKY-VVAKRNRAHTRTGCQVRMGITLLReTMTYKVHDLAVEHNHLLQ 125
                       69********************************************9.999******************98889**************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-1636125IPR004330FAR1 DNA binding domain
PfamPF105515.1E-27247341IPR018289MULE transposase domain
PROSITE profilePS509669.829528564IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-5539566IPR006564Zinc finger, PMZ-type
PfamPF044347.5E-6540562IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 774 aa     Download sequence    Send to blast
MTVEKAMEQN LERSTKPPCW MPQIGMTFNS YEEAWDFWVK YGGRIGFDVR NNYTNKSDLD  60
QLVTSSRFVC SNQGSRAEEK KYVVAKRNRA HTRTGCQVRM GITLLRETMT YKVHDLAVEH  120
NHLLQTPQTS HLMPSQRNIS KHQAVEIEVA YDSGITPKAA HEFLGRHVGG SANLGYTQRD  180
HKNYLRSRRQ RDLLYGEAGS LLKYFQDKIV ENPSFHYAVQ LDCEEQIANI FWADARMIAD  240
YAHFGDVITF DTTFGTNKES RPFGMFVGFN HFRETVVFGA ALMYDETFES FKWLFNTFLS  300
AHNQKQPQTI FTDQDIAMGK AVSEVFTGAW HGLCTWHISQ NEVKHLSPQQ TEGSSILADF  360
SACMYEYEEK EEFEDVFDAM RQKVRKVTWL DSIYNLKEKW AECYMSDVFT IGMRSPQLSE  420
SLNSNLKGHL KSDLDIGRFL NRVERVVEEK REKELQSEYE SRKKLPRIMM MTPMLVQASK  480
LYTPALFEVF QAEYEKSMAT YTKGSNGSND FIIAIGSLDD QFILEDEHKV TANPFDQTVS  540
CSCRMFERIG LLCRHALKAL DLVNIKLLPE KYVLKRWTRE AKCGAIQDMH GRQIVEDPKL  600
STTLRYRYLY QQFLPLASRA VDFEECYLLV EEALHAVSKK VEDKIKQTYS DGIAKSNDQS  660
TSQLAQNLAH VSGLKKKESR KRVTKRKTNW IDKLQKTKKR KPEEKAEEEN LQTDVEEHQE  720
CEAISSYAQL LLQRIRLKLL CQSGLMLQKY VTIRYTQELT AQVTMFRRVR THS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1684698KRKTNWIDKLQKTKK
2684700KRKTNWIDKLQKTKKRK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QY69
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g03660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g03660
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBX0004980.0BX000498.1 Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619119.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ2QY690.0Q2QY69_ORYSJ; Transposon protein, putative, unclassified
STRINGLOC_Os12g03660.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-101FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]