PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g03290.1
Common NameOs12g0126300, OsJ_35080
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 444aa    MW: 49305.1 Da    PI: 4.5454
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g03290.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.82.3e-1279136155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++   ++ k+ + g ++++e Aa+a++ a++k++g
  LOC_Os12g03290.1  79 SIYRGVTRHRWTGRFEAHLWDkNCSTSlQNkKKGRQGAYDSEEAAARAYDLAALKYWG 136
                       57*****************99554433744577777********************98 PP

2AP255.81.1e-17179231156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       s+y+GV +++ +grW+A+I  +     +k+ +lg+f+t eeAaka++ a+ +++g+
  LOC_Os12g03290.1 179 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 231
                       89****99**********988422...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.89E-1679145IPR016177DNA-binding domain
PfamPF008473.1E-1079136IPR001471AP2/ERF domain
SMARTSM003804.8E-2480150IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-1380145IPR001471AP2/ERF domain
PROSITE profilePS5103219.46780144IPR001471AP2/ERF domain
PRINTSPR003673.6E-68192IPR001471AP2/ERF domain
PfamPF008474.3E-13179230IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-18179240IPR016177DNA-binding domain
CDDcd000185.67E-26179240No hitNo description
SMARTSM003805.3E-27180244IPR001471AP2/ERF domain
PROSITE profilePS5103218.993180238IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-19180238IPR001471AP2/ERF domain
PRINTSPR003673.6E-6220240IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009009anatomyplant embryo
PO:0001081developmental stagemature plant embryo stage
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAKRSSPDPA SSSPSASSSP SSPSSSSSED SSSPMSMPCK RRARPRTEKS TGKAKRPKKE  60
SKEVADPSSN GGGGGKRSSI YRGVTRHRWT GRFEAHLWDK NCSTSLQNKK KGRQGAYDSE  120
EAAARAYDLA ALKYWGPETV LNFPLEEYEK ERSEMEGVSR EEYLASLRRR SSGFSRGVSK  180
YRGVARHHHN GRWEARIGRV LGNKYLYLGT FDTQEEAAKA YDLAAIEYRG ANAVTNFDIS  240
CYLDQPQLLA QLQQEPQLLA QLQQEPQVVP ALHEEPQDDD RSENAVQELS SSEANTSSDN  300
NEPLAADDSA ECMNEPLPIV DGIEESLWSP CLDYELDTMP GAYFSNSMNF SEWFNDEAFE  360
GGMEYLFEGC SSITEGGNSM DNSGMAEYNL FEECNMLEKD ISDFLDKDIS DFLDKDISIS  420
DRERISPQAN NISCPQKMIS VCN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.796600.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154871230.0
Expression AtlasQ2QYA7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g03290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g03290
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2476260.0AB247626.1 Oryza sativa Japonica Group OsANTL mRNA for aintegumenta-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619972.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700 isoform X1
SwissprotQ6X5Y61e-92WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLA2ZHQ20.0A2ZHQ2_ORYSI; Putative uncharacterized protein
TrEMBLQ2QYA70.0Q2QYA7_ORYSJ; AP2 domain containing protein, expressed
STRINGLOC_Os12g03290.10.0(Oryza sativa Japonica Group)
STRINGBGIOSGA036704-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.33e-72AP2 family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]