PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g02420.2
Common NameLOC9269857, Os12g0116400, OSNPB_120116400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 223aa    MW: 25076.8 Da    PI: 8.6617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g02420.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.11.5e-2242103259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                       dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  LOC_Os12g02420.2  42 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 103
                       8***************************99999*******8761679*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-2429103IPR003657WRKY domain
SuperFamilySSF1182908.11E-2333104IPR003657WRKY domain
PROSITE profilePS5081115.99636105IPR003657WRKY domain
SMARTSM007742.2E-3341104IPR003657WRKY domain
PfamPF031064.4E-2542102IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MALDSVPSYP SDLGSSRART PQQQRVRKEE RTWTTDTYAP YDDGHQWRKY GEKKLSNSNF  60
PRFYYRCTYK NDMKCPATKQ VQQKDTNDPP LFSVTYFNHH TCNSSPKIVG STPDSTVQSR  120
KAISICFNSH GKTGELPTFL SPSASLLSPS MQPYSSNQQP DMNTYSRQFH WADTSSSTSY  180
APVKMEADDY AEASASPSTT GALSRTLLPI GQSRCIEYFH FL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.471460.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QYK0
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g02420.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g02420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8320180.0CT832018.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA105A09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620027.11e-167PREDICTED: probable WRKY transcription factor 29 isoform X2
TrEMBLQ2QYK01e-167Q2QYK0_ORYSJ; Os12g0116400 protein
STRINGLOC_Os12g02420.11e-155(Oryza sativa Japonica Group)
STRINGORGLA12G0007300.11e-155(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.12e-21WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]