PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g02420.1
Common NameLOC9269857, OsJ_35006
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 225aa    MW: 25260.9 Da    PI: 8.6617
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g02420.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.11.5e-2244105259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                       dDg++WrKYG K+  +s+fpr YYrCt++   +Cp++k+v+++ ++dp ++ +tY ++H+++
  LOC_Os12g02420.1  44 DDGHQWRKYGEKKLSNSNFPRFYYRCTYKndmKCPATKQVQQKdTNDPPLFSVTYFNHHTCN 105
                       8***************************99999*******8761679*************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-2431105IPR003657WRKY domain
SuperFamilySSF1182908.24E-2335106IPR003657WRKY domain
PROSITE profilePS5081115.99638107IPR003657WRKY domain
SMARTSM007742.2E-3343106IPR003657WRKY domain
PfamPF031064.5E-2544104IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MALDSVPSYP SDLGSSRART PQQQRVSPRK EERTWTTDTY APYDDGHQWR KYGEKKLSNS  60
NFPRFYYRCT YKNDMKCPAT KQVQQKDTND PPLFSVTYFN HHTCNSSPKI VGSTPDSTVQ  120
SRKAISICFN SHGKTGELPT FLSPSASLLS PSMQPYSSNQ QPDMNTYSRQ FHWADTSSST  180
SYAPVKMEAD DYAEASASPS TTGALSRTLL PIGQSRCIEY FHFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.471460.0callus| leaf| panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QYJ9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g02420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g02420
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0732430.0AK073243.1 Oryza sativa Japonica Group cDNA clone:J033005D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620026.11e-168PREDICTED: probable WRKY transcription factor 29 isoform X1
TrEMBLA0A0E0RCX51e-168A0A0E0RCX5_ORYRU; Uncharacterized protein
TrEMBLI1R3G71e-168I1R3G7_ORYGL; Uncharacterized protein
TrEMBLQ2QYJ91e-168Q2QYJ9_ORYSJ; Uncharacterized protein
STRINGLOC_Os12g02420.11e-168(Oryza sativa Japonica Group)
STRINGORGLA12G0007300.11e-168(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP203235100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-22WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]