PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g02400.1
Common NameLOC107279783, OsJ_35004
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 338aa    MW: 37541.6 Da    PI: 5.7689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g02400.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.52.8e-23140201259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                       +Dgy+WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  LOC_Os12g02400.1 140 EDGYQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQEdKNDPPMFQVTYSNEHTCT 201
                       8***************************99999*******9862579*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.31E-21132201IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-23133201IPR003657WRKY domain
SMARTSM007742.4E-33139202IPR003657WRKY domain
PfamPF031065.3E-25140200IPR003657WRKY domain
PROSITE profilePS5081117.373140203IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAVTESVCLS DEQQAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HAMRALNVAL  60
SVMNQPHASS SSSAAAAAGG HHFPVMTMIK AESTPANSPA ADVSDNHVAG KARRSSPAKR  120
RRINCEDKSS WVYHTVVPHE DGYQWRKYGE KKIQGTHFTR SYFRCTYRDD RGCQATKQIQ  180
QEDKNDPPMF QVTYSNEHTC TTTRLINNTN NNPAALHSLT ANPNGHPDDD SDDTILTKMI  240
KQEQQAAWLP SPPPDLTTIS NNFDETPGLH VSQEVPPCSS NSSAISHYAD EFDHHQMGQQ  300
LETTVMEEAL GLGADLDDPY FYDPNLLLIY ENLMNCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118122KRRRI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QYK2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g02400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g02400
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBX8422440.0BX842244.3 Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBb0006G23 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619940.10.0PREDICTED: probable WRKY transcription factor 69 isoform X1
TrEMBLQ2QYK20.0Q2QYK2_ORYSJ; Uncharacterized protein
STRINGLOC_Os12g02400.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.27e-18WRKY family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]