PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g41640.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 247aa    MW: 27597.9 Da    PI: 4.9932
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g41640.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.6e-111712111055
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  LOC_Os11g41640.1 171 KRRRERINERLRILQQLVPNG-----TKVDISTMLEEAVQYVKFLQ 211
                       9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13161221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-14163222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11167216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.52E-12170215No hitNo description
PfamPF000101.9E-8171211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDARCANIWS SADARSEESE MIDQLKSMFW SSTDAEINFY SPDSSVNSCV TTSTMPSSLF  60
LPLMDDEGFG TVQLMHQVIT GNKRMFPMDE HFEQQQKKPK KKTRTSRSVS SSSTITDYET  120
SSELVNPSCS SGSSVGEDSI AATDGSVVLK QSDNSRGHKQ CSKDTQSLYA KRRRERINER  180
LRILQQLVPN GTKVDISTML EEAVQYVKFL QLQIKLLSSD DTWMFAPLAY NGMNMDLGHT  240
LAENQE*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2R0R9
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g41640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g41640
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1183461e-122AC118346.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0039F06, complete sequence.
GenBankAP0149671e-122AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616351.11e-162PREDICTED: transcription factor bHLH85-like
SwissprotQ84WK02e-43BH085_ARATH; Transcription factor bHLH85
TrEMBLQ2R0R90.0Q2R0R9_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGLOC_Os11g41640.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10481454
MonocotsOGMP140022528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27740.17e-32root hair defective 6-like 4
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]