PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g39000.1
Common NameILI2, LOC4350872, Os11g0603000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 102aa    MW: 10995.6 Da    PI: 7.3656
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g39000.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-0823631554
                      HHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS
               HLH 15 riNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54
                      ++ + +++L+ +lP++ ++ + K  s ae+L++A++YI+ L
  LOC_Os11g39000.1 23 QMAELISKLQAVLPTRGGEANAKqASSAEVLQEACRYIRRL 63
                      78899**********777777787***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-72279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-52363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-72366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0040008Biological Processregulation of growth
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MSSSRRSRTS SRLAAAPPPT DEQMAELISK LQAVLPTRGG EANAKQASSA EVLQEACRYI  60
RRLHREADAL SERLAELLLL QPSDLAINGA DVPDLIRSLL M*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2R1J3
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g39000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g39000
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1113031e-171AK111303.1 Oryza sativa Japonica Group cDNA clone:002-181-B06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616700.13e-65PREDICTED: transcription factor ILI2 isoform X1
SwissprotB8BLA34e-67ILI2_ORYSI; Transcription factor ILI2
SwissprotQ2R1J34e-67ILI2_ORYSJ; Transcription factor ILI2
TrEMBLI1R1H23e-65I1R1H2_ORYGL; Uncharacterized protein
STRINGBGIOSGA033734-PA9e-65(Oryza sativa Indica Group)
STRINGLOC_Os11g39000.19e-65(Oryza sativa Japonica Group)
STRINGORGLA11G0161400.19e-65(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8216416
MonocotsOGMP170041112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.17e-12bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]