PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g38870.2
Common NameLOC4350864, Os11g0601700, OsJ_34429, OSNPB_110601700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 269aa    MW: 28932.9 Da    PI: 7.8683
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g38870.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.22e-053783151
                      CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHH CS
               HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYI 51
                      +++ + erE+  Rd++N+ f eL ++l +      +   Ka++L  A + +
  LOC_Os11g38870.2 37 KKTHKAEREKLKRDQLNDLFVELSSMLDPE----RQNSGKATVLGDAARVL 83
                      678899*********************885....23444555666665555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.83E-43491No hitNo description
Gene3DG3DSA:4.10.280.101.0E-834106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-1134100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.8233686IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00254292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MVADTESSGS LGGSSNAASD KAVDGSLDKR SQEKAPKKTH KAEREKLKRD QLNDLFVELS  60
SMLDPERQNS GKATVLGDAA RVLRDLVSQV ESLRKEQSAL LTERQYVGSE NNELQEENIM  120
LRAQILELHN EICARMGNNH LNQSNLAMSQ PVANNGSNSA TQPVPHHIWG NGPNLAMVHP  180
TNTLSPLHNQ HHQSAGASQV YASRPQELQL FPGTSVSTER ERSRAGSGST PATSSGLTDS  240
LPGQLRLSLP QSSQEENSSG SKKGRKKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.272430.0callus| flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329780350.0
Expression AtlasQ2R1K8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g38870.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g38870
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0680170.0AK068017.1 Oryza sativa Japonica Group cDNA clone:J013132D22, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617820.10.0PREDICTED: transcription factor bHLH121 isoform X2
RefseqXP_015617821.10.0PREDICTED: transcription factor bHLH121 isoform X2
RefseqXP_015617822.10.0PREDICTED: transcription factor bHLH121 isoform X2
TrEMBLQ2R1K80.0Q2R1K8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGLOC_Os11g38870.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.39e-32bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Li X, et al.
    Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
    Plant Physiol., 2006. 141(4): p. 1167-84
    [PMID:16896230]