PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g32100.1
Common NameLOC4350609, Os11g0523700, OSNPB_110523700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 525aa    MW: 53529.1 Da    PI: 5.7491
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g32100.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-11339381754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  LOC_Os11g32100.1 339 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 381
                       79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.764332381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-17335407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-14338387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9338381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.86E-13339385No hitNo description
Gene3DG3DSA:4.10.280.103.4E-16339394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.84E-4453494No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MLPRFHGAMW MQDDGGGDQE HGQAAPPGQE QHHHDQHLMA LAAAAAGGAG FGAAQAPAPL  60
LDEDWYFDAA GGGGGGAHGS MMLGLSSVHG GIGAGTSGGG HGQQFSLLNM GAAAAPFDVS  120
GFDLGIACGG VGGGGDVVSF LGGGNASNTA LLPVGNAGFL GTFGGFGTAA SQMPEFGGLA  180
GFDMFDAGAV NTGGSSSSSS AAAAAASASA HVSNTAPFSG RGKAAVLRPL DIVPPVGAQP  240
TLFQKRALRR NAGEDDDDKK RKAAAGAGAG ALSADGADMV LDDGDDDGLS IDASGGLNYD  300
SEDARGGEDS GAKKESNANS TVTGDGKGKK KGMPAKNLMA ERRRRKKLND RLYMLRSVVP  360
KISKMDRASI LGDAIEYLKE LLQKINDLQN ELESSPATSS LPPTPTSFHP LTPTLPTLPS  420
RIKEEICPSA LPSPTGQQPR VEVRLREGRA VNIHMFCARR PGLLLSAMRA VEGLGLDVQQ  480
AVISCFNGFT LDIFKAEQCK DGPGLLPEEI KAVLMQSAGF HTMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1328346KKKGMPAKNLMAERRRRKK
2340347ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.563560.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329951240.0
Expression AtlasQ2R3F6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g32100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g32100
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099150.0AK109915.1 Oryza sativa Japonica Group cDNA clone:002-150-C06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616517.10.0PREDICTED: transcription factor ICE1
SwissprotQ9LSE21e-119ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0E0R9350.0A0A0E0R935_ORYRU; Uncharacterized protein
TrEMBLQ2R3F60.0Q2R3F6_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGLOC_Os11g32100.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5571678
MonocotsOGMP164637101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-91bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]