PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g28270.2
Common NameLOC4350492, Os11g0472000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 407aa    MW: 44742.6 Da    PI: 8.8549
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g28270.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.1e-112144326
                      S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                      ++ C++++rtG C++G +CkF+H+
  LOC_Os11g28270.2 21 EPDCSYYMRTGLCRFGMTCKFNHP 44
                      789********************8 PP

2zf-CCCH391.4e-126690327
                      S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                      +++C+++++tGtCk+G++CkF+H++
  LOC_Os11g28270.2 66 QPECQYYLKTGTCKFGATCKFHHPR 90
                      799********************96 PP

3zf-CCCH36.76.8e-12112136327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       +++C +++rtG+Ck+G++CkF+H++
  LOC_Os11g28270.2 112 EKECAYYLRTGQCKFGSTCKFHHPQ 136
                       679********************97 PP

4zf-CCCH39.78.2e-13273298227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C+f+++tG Ck+G+ CkF+H++
  LOC_Os11g28270.2 273 DQPECQFYMKTGDCKFGAVCKFHHPK 298
                       689*********************96 PP

5zf-CCCH38.61.8e-12318344127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C f++r+G+Ck+G++CkF H++
  LOC_Os11g28270.2 318 PGEPICTFYSRYGICKFGPNCKFDHPM 344
                       5799*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-41845IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.8681846IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-82144IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-52346IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-42445IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2446391IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-66390IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-66692IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-106690IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-56991IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619109137IPR000571Zinc finger, CCCH-type
SMARTSM003563.4E-5109136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-6109137IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9112136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4115135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.511271299IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5271298IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5274299IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4277298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6316343IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-7317344IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.178317345IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-10319344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4322342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MWQMNLGEAM EAGPYPERIG EPDCSYYMRT GLCRFGMTCK FNHPADRKMA VAAARMKGEY  60
PQRIGQPECQ YYLKTGTCKF GATCKFHHPR EKAAIATRVQ LNALGYPLRP NEKECAYYLR  120
TGQCKFGSTC KFHHPQPSNT MVAVRGSVYS PGQSVTSPSQ HTYPGAVTNW PLSRSASFIA  180
SPRWPGHSSY AQVIVPPGLV QVPGWNPYAA QIGSSSSDDQ QRTAGGAQYY TGSRHSETPN  240
MGDQGMFSSY QAGSVPLGLY TVQRESIFPE RPDQPECQFY MKTGDCKFGA VCKFHHPKER  300
IIPTPNCALS SLGLPLRPGE PICTFYSRYG ICKFGPNCKF DHPMGTVMYG LATSPTGDVS  360
ARRMLAPVPA HSEVSPDNVS GRSRRITHSD SQQIPSGERG TEREAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.129140.0callus| flower| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154854680.0
Expression AtlasQ2R4J4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g28270.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g28270
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9721480.0JX972148.1 Oryza sativa Japonica Group clone KCS005D01 zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617449.10.0PREDICTED: zinc finger CCCH domain-containing protein 63 isoform X2
SwissprotQ2R4J40.0C3H63_ORYSJ; Zinc finger CCCH domain-containing protein 63
TrEMBLA0A0E0MFD00.0A0A0E0MFD0_ORYPU; Uncharacterized protein
TrEMBLI1R0360.0I1R036_ORYGL; Uncharacterized protein
STRINGLOC_Os11g28270.10.0(Oryza sativa Japonica Group)
STRINGORGLA11G0112800.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-157zinc finger protein 1
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]