PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g25610.1
Common NameLOC4350427, Os11g0442900, OsJ_32680, OSNPB_110442900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 452aa    MW: 45813.8 Da    PI: 5.3988
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g25610.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023117139123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +C k F ++     H+r+H
  LOC_Os11g25610.1 117 FACRICRKEFDTRKAVDGHMRVH 139
                       78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139120.068116142IPR007087Zinc finger, C2H2
SuperFamilySSF576672.61E-6116139No hitNo description
PROSITE profilePS5015710.325117144IPR007087Zinc finger, C2H2
SMARTSM003550.01117139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-4221235IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.39222251IPR007087Zinc finger, C2H2
SMARTSM003550.75222246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224246IPR007087Zinc finger, C2H2
SuperFamilySSF576672.61E-6274301No hitNo description
PROSITE profilePS501578.974279306IPR007087Zinc finger, C2H2
PfamPF139120.0016279302IPR007087Zinc finger, C2H2
SMARTSM003556.3279301IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280281301IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001012developmental stageG early unicellular microspore stage
PO:0001013developmental stageH late unicellular microspore stage
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MEGGNSSKGA MEGGHRCRRP NVDDDDQIEE GEICYDCHVS GSETDDDEHH RRAVLPPRDN  60
GDGCAEHKRC RLDNAATAPA PSAGPVLTTS NGSAIVAIAS AAAAAAAAAS TMAREVFACR  120
ICRKEFDTRK AVDGHMRVHR QQSIATPKYN AADNSRVTVV AEPRTDLDLS GPHGSSSAPP  180
SPPAPANPPN HNQAVGHQPA AAAPNAGVVV VVEGAPQKSL PYMCKMQGCG RAFPTHQGLG  240
GHAAGHQNRS KAAAAAASEQ GSSGAGADGC HGGADSSKHR CRECGMEWKT GFALGGHMRK  300
HQTKETVTVN EKEPNVAGKH ISLGPPPLPD LTPAAAEVTS SEPLDQPPLL SMVVGAEVAA  360
PALLALANEA AALPPQDDQA EEEAAAEAAA PAEAAALRPV EAGAEAADVG AAPEEPLLAP  420
IAGMGTVRIF GFLVEKPAPG DGSGGEGSAP A*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329961230.0
Expression AtlasQ53KY2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g25610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g25610
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453670.0AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAK1109140.0AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616778.10.0PREDICTED: myristoylated alanine-rich C-kinase substrate
TrEMBLQ53KY20.0Q53KY2_ORYSJ; Os11g0442900 protein
STRINGLOC_Os11g25610.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1012237
MonocotsOGMP171081012
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]