PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g25560.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 509aa    MW: 52391.5 Da    PI: 8.131
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g25560.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH110.000783273811155
                       HHHHHHHHHHHHHHCTSCCC.............TTS-STCHHHHHHHHHHHHHHH CS
               HLH  11 rRRdriNsafeeLrellPkas..........kapskKlsKaeiLekAveYIksLq 55 
                        RR++i +++  L++l+P +            +      Ka +L + ++Y++sLq
  LOC_Os11g25560.1 327 VRREKISERMKLLQDLVPGCNkvakfsqkinLNFTLVTGKAVMLDEIINYVQSLQ 381
                       6******************777877766664333333568888888888888887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.347316380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-4326386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-9326398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-10326397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.02E-7328385No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MAHDGFLGGG GGSFHAMAAW PLPFDAAAAL HGGGWDSDPA LGELVPSPVG VGVGGGVHKA  60
ALMDELASRL GGVCGGGLGG GGVPSPPSSS RYASCYSTPV GSPCKPAPAP PVPSLLAAAD  120
AMIAERAARM SCLAAAGHGG GKLSRAASSQ SLLAETAAAG GVHQLPASDG SSSDAPCRKR  180
KAPCAKARGK DAATTIAKVL RLLSAPPLQS RRRTSPETMV NFPQSPEPGT KAKKCKLSAD  240
AAGDEDTKPV AGDAGHGGNG KGKVLDAAGE PPKDYIHVRA RRGQATDSHS LAERVKAAGI  300
DAANHNFFFS SILAFADAIA AVFHLQVRRE KISERMKLLQ DLVPGCNKVA KFSQKINLNF  360
TLVTGKAVML DEIINYVQSL QRQVEFLSMK LSTVNPQLDF DVDNFIPKDQ ASDPIMPAPL  420
SLPPPPPPLS YSPEGASPGI CYASSQGTAM QSVVTSTKHL ETAPTFANHH VIPVPSLDGF  480
HSAHSQAGSC MWEDDLQSVV QMGFRGNT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.795250.0leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2R5B7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g25560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g25560
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465230.0AC146523.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0045D11 map near 50283S, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankAK2889700.0AK288970.1 Oryza sativa Japonica Group cDNA, clone: J090085B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615632.10.0PREDICTED: transcription factor bHLH78 isoform X1
TrEMBLQ2R5B70.0Q2R5B7_ORYSJ; Expressed protein
STRINGLOC_Os11g25560.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-43bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]