PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g17430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1107aa    MW: 126072 Da    PI: 8.4225
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g17430.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR156.87.5e-18414494190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn YA + GF +r +k++ +  n++ t+r+ +Cs +gk++++k+          + r+gC a++k+++ k  g w vtk++  HnH++ 
  LOC_Os11g17430.1 414 NFYNVYAVSKGFGIRLNKERLN-VNKQRTMRQICCSHQGKNTNTKEP---------SVRIGCPAMIKINRLKgAGSWTVTKVVAAHNHPMK 494
                       6****************99998.77779*************997655.........9*************999***************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-13414494IPR004330FAR1 DNA binding domain
PfamPF105514.1E-33590683IPR018289MULE transposase domain
PROSITE profilePS5096610.361874910IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-7885912IPR006564Zinc finger, PMZ-type
PfamPF044344.5E-5886907IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1107 aa     Download sequence    Send to blast
MKMKKFYQKA LDEAFAAVQE SSDADFKSDE DDDKGKNVVG VCFMARSVEE YSDDDNEVIP  60
TPSVEYLQEV IARLGYKISK FEKKISQHEV TIESLNAENS RIRSLISDDD ECKSCEVLFA  120
EIKSIRDVYS KKLDVESKKT RKFESCLALS FAMNTRLVDE LFLTKRALNK CQVALFASSM  180
FNLISSKRIK QYSTKPCLTC VANEMKLKDA LGRVKKQKGL LDACKNCATL TQEVSYLKSS  240
LQRFSDGKKN LNMILDQSKV IRMRDNSYTR NLSRRFKNNS WDSSTNKSLI LSQIIMDECN  300
PSFGIPDGDS IPHGVQTSPV AMEEDMSLTV GSHDSGHGTP VTRSVLPSLD WTEGNPAEKD  360
GAGIPMERLN EYNLFRMVVD NVDSSAAIPL EYADANILAP ALGQRFKTER DAFNFYNVYA  420
VSKGFGIRLN KERLNVNKQR TMRQICCSHQ GKNTNTKEPS VRIGCPAMIK INRLKGAGSW  480
TVTKVVAAHN HPMKKSIGVT KNYHSHNRID EGTRGIIEEM VDNSMSLTNM YGLLSSMHGG  540
ASMVPFMRKA MDRLAYAIRR DECSDDMQKN TKCPEGFAKK ELNYEHFGDV ITFDTTYKTN  600
RYNMPFAPFV GVNNHFQSTF FGCALLREET KESFAWLFET FKDCMNGKEP IGILTDNCPS  660
MAAAIRKVFP NTIHRVCKWH VLKKAKEFMG NIYSKRRSFK KAFHKVLTQT LTEDEFEAAW  720
HKLISDYQLE NNVYLRHIWD IRRKWAFVYF AHRFFAGMTT TQRSESANHV FKMFVKPSSS  780
MNGFVKRYDR FFNEKLQKDD SEEFQTSNDK VEIKTSSPIE IHASQVYTRA VFQLFSEELT  840
DSLSYMVKPG EDESTVQVVR MCTEESSSFL RKEYQVYYDV EREEFSCVCK MFEHKGILCS  900
HVLRVLVQYG LSKIPDRSYR HVMLNKKSVE VASVANKDVQ TFKMAMTVIN QLLEDMKSRL  960
SLDDDDNSGA APKRATIQIS RPTVLSEDGN EDVGAADVDS AYDMSSEEES GDNTGDVLPP  1020
VRKRSRGRPK VNRYKSSGEA ASMKRRKEVR SEKSKAANEG DSVEEENQDN DHADEMPFPR  1080
RFCHTCHQAG HNSRTCGRTS TYKRKF*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53QA1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g17430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g17430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1163680.0AC116368.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0061D06, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ53QA10.0Q53QA1_ORYSJ; Transposon protein, putative, unclassified
STRINGLOC_Os11g17430.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-90FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]