PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g15210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 459aa    MW: 49396.2 Da    PI: 4.6064
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g15210.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.58.7e-12243290355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                       ++h + ErrRR+++++ f  L++++P+        K++Ka+iL +++ Y+k+L+
  LOC_Os11g15210.1 243 KNHVMSERRRREKLKEMFLILKSVVPSiH------KVDKASILAETIAYLKELE 290
                       5899***********************66......****************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.7E-101351IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088815.339240289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-17243311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-14243294No hitNo description
PfamPF000104.0E-9244290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-16244301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-14246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MYDDNGAADL PTSQSASIKT IVCVPFIMHG VLELGTTDPV SEDPALVDRI TASLWDTPPR  60
AAFSSEAGVA DIVVFEDLDH GNTAVEATTT MVPGEPEPHA VAGGEVAECE SNAHNDLEQI  120
TMDDIGELYS LCEELDVLDD DSSSWVADPW SSFQLVPTAE ATDVDDAVVA ALGAIDGSCR  180
PSPSSFVAWK RTPDSDEVQA VPLISGEPPQ KLLKKAVAGA GAWMNNADGS AATMTTDQGS  240
SIKNHVMSER RRREKLKEMF LILKSVVPSI HKVDKASILA ETIAYLKELE KRVEELESSS  300
QPSPRPMETT RRRCCKSTGK KVSAGARAKR KAPAPEDTDG ERRHCVSNVN VTIMDNKELL  360
LELQCQWKEL LMTRVFDAIK GVSLDVLSVQ ASTSDGLLGL KIQAKVVVSA AKSSQQICSI  420
VYLSIYQSLY LRLFGVLILA ILLLHACSLP HLLPSNLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248253ERRRRE
2249254RRRREK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53L62
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g15210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g15210
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453640.0AC145364.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0062D09, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616671.10.0PREDICTED: anthocyanin regulatory Lc protein
SwissprotP135263e-89ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLQ53L620.0Q53L62_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGLOC_Os11g15210.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24471429
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.31e-19bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]