PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g14020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 618aa    MW: 69023.5 Da    PI: 8.2353
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g14020.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR178.31.5e-2438128290
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       fY++YA ++GF+vr sks  s+ ++ i++r+fvC+++g ++++++   ++k+rr+ra+ r  C a+l+v+++ +++w v++++l H+H+la
  LOC_Os11g14020.1  38 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCVLLHSHPLA 128
                       9**************************************999988787999**************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.2E-2338128IPR004330FAR1 DNA binding domain
PfamPF105518.4E-17220311IPR018289MULE transposase domain
PROSITE profilePS5096610.769500536IPR007527Zinc finger, SWIM-type
SMARTSM005751.7E-6511538IPR006564Zinc finger, PMZ-type
PfamPF044344.9E-6512535IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MPLGAAGDED AAAVTGPSSA GEPAAGMEFA SPEEARAFYC TYAARAGFRV RSSKSFASRI  60
DDAIIMRRFV CTRQGLPSRK DTLLDASKKR RNRASARAAC PAMLQVNRRP SSRWLVSRCV  120
LLHSHPLASS SSSADAAATD AAEPNDSSSA EQDGGAAAAA AALAPGGGVA QGLLDHFRKL  180
QLDNPAFCYA VQIDRSGCIA NFIWVDARAR SLYRRFGDAV VLDLTCRRNR RAVPFAAFTG  240
MNHHRQAIVF GCALMTDESE NSFAWLFETW LAFMGGKKPM SFTIGYSRDV EMAAMKVFGG  300
DVRHRFCRRD IFFICKQKLA SLYSEHSTLK DELKECVTEL ERIDEFESTW RMLLSKYNLF  360
GNEWLQTIYS IRHQWVPAYL KDSFFGEIIN APKLETMFKF FQRSSITTTT LRDIAFQFDK  420
AIARDYQTEL QEDFATFSSK PVMKSSHPME KQASELYTKV MFDLFQDELI ESSGFLVQNV  480
ESGDISRFEV TQSENANIRY TVLYSEPRAS VSCSCHKFEF AGVLCRHALR VLTAIGIPVL  540
PENYILKRWT RNAKNNILSQ VPANTKGSLA WRCNDLCRDG IRFAEEGATS EEIYKTAKEA  600
LQKAFAEILP QSEAHLK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.986150.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53M07
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g14020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g14020
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1380000.0AC138000.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0024M06, complete sequence.
GenBankAC1354590.0AC135459.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0004P24, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615544.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 9
TrEMBLQ53M070.0Q53M07_ORYSJ; Transposon protein, putative, unclassified
STRINGLOC_Os11g14020.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-116FAR1-related sequence 3
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]