PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g12360.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 2316aa    MW: 264382 Da    PI: 7.804
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g12360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.21.5e-11842741
                      HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS
            SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifs 41
                        r vt+ +Rr+g++KK  ELS+LC ++++++++ 
  LOC_Os11g12360.1  8 AARRVTLRRRRAGLIKKVTELSILCSVQASIVVYN 42
                      5799****************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006614.115142IPR002100Transcription factor, MADS-box
SMARTSM004325.8E-4154IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-14389IPR002100Transcription factor, MADS-box
PfamPF003191.8E-11548IPR002100Transcription factor, MADS-box
PfamPF139631.4E-22170242IPR029480Transposase-associated domain
PfamPF029921.2E-104462685IPR004242Transposon, En/Spm-like
PfamPF139604.2E-51858981IPR025452Domain of unknown function DUF4218
PfamPF139522.0E-2311281194IPR025312Domain of unknown function DUF4216
SuperFamilySSF540012.75E-3620452282No hitNo description
PROSITE profilePS506009.73320602243IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:3.30.310.1303.7E-821482238No hitNo description
PfamPF029028.9E-821502261IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 2316 aa     Download sequence    Send to blast
MARLTKNAAR RVTLRRRRAG LIKKVTELSI LCSVQASIVV YNIDEAGDPV VWPSIEEAKN  60
MWSKLMDMSE ATQKKWMQDS KTLLQQQIMK LNKKLDNLKA ENYKREITNI ISQIGGGHRK  120
NLNDLSPEMV KNVKREVAKL REAIRNRIIK LHAQVIEKCI DYIIFSMMDR QWMYVDRRSK  180
EFIDGVHYFL RVAEANRQRG FICCPCNKCK NQKEYSASRT IHFHLFESGF MPSYNCWTSH  240
GEQGVEMEEN EVEDDNIPDF AQYVGFEGNQ TGEEEIAADG NDVADDLGQM LQDAREDCES  300
EKEAHKLDKI LEDHRTSLYP GCEQGHKKLD TTLELLQWKA KNGVSDKAFG DLLKLVKNIL  360
PGGNKLPETT YEAKKIVCPL GLEVHKIHAC PNDCILYRGE EYENLEACPV CKALRYKIRR  420
DDPGEVDGQL TKKRIPAKVM WYLPIIPRLR RLFRNKGNAR MLRWHAEERQ QDGMLRHPAD  480
GSQWRNIDRK FKEFGKDARN IRFGLSTDGM NPFGEMSSGH STWPVTMCIY NLPPWLCMKR  540
KYIMMLIIIQ GPKQPGNDID VYLRPLVEDL KQLWKKEGVP VWDEDKQEEF NLRALLFVAI  600
NDWPALSNLS GQSNKGYKAC THCMDETEST YLKHCRKVVY MGHRRFLAAN HPVRKKGKHL  660
EHKADHRTKP KHRSRKTVFA MVKDLKVVFG KGPGSQHIES EDGHAAMWKK NSIFWELPYW  720
EFLDVRHAID VMHLTNNLCV NLLGFLGVYG KSKDTLEARN DLKHMEQRGD LHPEPKEKGS  780
HYLSPASYTL SKAEKESMFE CLESIKVPSG YSTNIKRIIS TKEKKFTNLK SHDCHVLMTQ  840
LLPVVIRGII PDNVRATITK LCAFMNAISQ KVIDPDRLEA LQNEVVQCLV SFELIFPPSF  900
FNIMTHLLCH LVKEIRILGP MYLHNMFPFE RYMGVLKKYV RTRARPEASI AKGYGTEEVI  960
EFCVEFIEDL RPIGVPESRH EGRLRGKGTL GRKAITTVDN NLFSKAHFTV LQHSSLVAPY  1020
IEEHLALVRA RNIGKSDAWI TRHHIDTFPA WLQQHLMGNE SINQQLAFLA RGPSGSIATF  1080
QGYEINGYTF YTRAQDMKST NQNSAVRVDA MGHNGTTATY YGAIEDIWEL DYGPLKVPLF  1140
RCQWVRLTGG GVMIDDSGMT TVDLNKVGYS DEPFVLANDV TQVFFVKDMS SKGKKGRGPD  1200
EPKRQVVLPG KRKIVGVEDK TDEDYDQLDG QPPFTVTIDP SILLSNEDTP YSRSDHKEGT  1260
IMADRDEEQI LYDTIAEGSS QYWNEEEGNE DPNQYLNEEG NVERDAEGNQ QGHVEWDVEG  1320
NQEEEASGSQ PSVGQKRARG QRGAAKKLEG RHIITEVEED GRPSAPAEAA KNYVRHSGWV  1380
VRDNVPVSTV YWRRTRARGD HESFVPDSEK EMLWTTMLET FTLPAGIEDK VKRWTLKKMA  1440
EQFQSFKGDL YQKYILKGQT PNFDTFPKLR DHWDEFVAYK TGEQGQAMME RNKENAAKKK  1500
YHHHLGSGGY SVAMPKWEQM EASLIERGIE PATANWPERS KFWYYAHGGT LNPADGSLVF  1560
GDQIREAARR LTDAVEASSQ GTFRPDRDRD ELTLALQTPE HPGRTRGKGV IPWKIGFKED  1620
IHTYRSRMRS KRDTEAKIAD LEFRVSSYEL NMQEEVARKV DERMAAHRSH DPQPTIPPAM  1680
VSPSGNRSSC ASTGQVGSQS MDAMQTQDES TCPVDDITQR TPCELHIPFK NLSIKVASGM  1740
AIPTDPSGTY HCRPIPAGYS KVEVKLVEGA YEDLELDYPG GDGETHLRDT CHAIILWRRR  1800
YIILPGRQAA SRAPSPPAPP SPPQDPAPSP PHAPPAPSPP QAPASTPPQD PAPTPPRAPT  1860
PTPPQAPLPA PSKSRAPPAP PPAHTRATKK AKVDAAKNKD PRYDCTQEEL DAYVASEVKR  1920
QFKPRSPEKK IPIDPSVRNF FRGMSASVKE AIKLSDYERT LKKASSGKSK PVPQLGEQPN  1980
QEIEPLVTGK EMTIEQFITD TGLTTDQLLG VAPIEKAEVK YMYELGKPLV KPELLQSLPT  2040
QMYKFHQLYM EMSATGREMI GARIRDTDFL QGDDILWINF RVIYELYQLD ALDVSIMSCW  2100
ILMEIQRARR RRVFDTGFID PRKVNVAMLD QYPQETEDNL VHLLKAQHYK TFILLPYNTE  2160
FHWVLLLFDL EACTVNVYDS MDKKESTFDK VFEVIDRAWY RFRHLVRGKW RERLRRKFKF  2220
PCAKQKQGTN LCGYYVCEYC HCLVYQIITT RELDFIHMRD NLTTHKEFIA AVQEQLMGFI  2280
NEEILDPKGE FYYDGNTIHR SLASELAATT TTSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
116261631RMRSKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.886520.0callus| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53Q24
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g12360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g12360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1196700.0AC119670.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0007H22, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ53Q240.0Q53Q24_ORYSJ; Transposon protein, putative, CACTA, En/Spm sub-class
STRINGLOC_Os11g12360.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.19e-11AGAMOUS-like 36
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]