PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g11600.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family GRAS
Protein Properties Length: 346aa    MW: 37286.5 Da    PI: 10.6382
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g11600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS76.64.5e-24312044170
              GRAS  44 yfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp 136
                       ++ + L+arla+++s++y++l +++ts   +++ l+a+klf  ++ +         ++I++av+g++++Hi+D+++s+G+QWpaL+  L +R+
  LOC_Os11g11600.1   3 HLENTLEARLAGTGSQMYQSLVAKRTS---TVDFLKAYKLFTAACCVK--------KTIYNAVAGKRKLHIVDYGLSYGFQWPALFFLLGTRE 84 
                       56789****************999999...8************99664........6899********************************* PP

              GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAe 170
                       +gpp++R+Tg++ p++g   ++++eetg+rL+  A+
  LOC_Os11g11600.1  85 GGPPEVRMTGIDVPQPGfrPADQIEETGRRLSICAR 120
                       ****************9**************98886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.3511116IPR005202Transcription factor GRAS
PfamPF035141.6E-213120IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MSHLENTLEA RLAGTGSQMY QSLVAKRTST VDFLKAYKLF TAACCVKKTI YNAVAGKRKL  60
HIVDYGLSYG FQWPALFFLL GTREGGPPEV RMTGIDVPQP GFRPADQIEE TGRRLSICAR  120
APVRCAIQVP RHCRKVGDGR ERGHGQGQPE PQRCGAQQQP RHEASRVRPE APERAAGSCC  180
CRHRRAATAL STVVLDGLQI GLGISARCCL AGKQTSRSAP SSSPPRPSLH LHLHLRRRPP  240
PSSSRHAADD AALHPLSRRR DAYVERMGEG EVVDGIWPDG GGERRPAAAV LALHRSARHR  300
SACHSQTAAA LARCQPPASA GEKRRDATSA KPGKNTAEGP PVNGL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.586501e-70callus| root
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53NZ7
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g11600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g11600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1330050.0AC133005.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0052C16, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ53NZ70.0Q53NZ7_ORYSJ; Uncharacterized protein
STRINGLOC_Os11g11600.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.17e-33SCARECROW-like 14
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]