PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g06840.1
Common NameLOC4349886
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 432aa    MW: 45345.9 Da    PI: 8.9803
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g06840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.41.3e-06194217123
                       EEETTTTEEESSHHHHHHHHHH.T CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                       ++CpdC+++F  +++L+ H +t H
  LOC_Os11g06840.1 194 FSCPDCDEVFVKPDSLELHRSTrH 217
                       89******************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.349194222IPR007087Zinc finger, C2H2
PROSITE patternPS000280196217IPR007087Zinc finger, C2H2
SuperFamilySSF563991.73E-18219430No hitNo description
Gene3DG3DSA:3.90.228.101.7E-11221429IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEASAAKEKD KDGKKMSRVG SWGSMAFYSS SSSSRSQPVS AAEGKNGGKK EKRRSSISRS  60
ITCAGSICST KESSVSSRGR GRRRRSGGGG GGDGGGGGST SSRSLMGPGY HGDSAAAVSA  120
SSSFNSVMTA ATSATATTTT TTTSSSATSP PSALSSPLSS IGGSFRAMQI RKLSGCYLHC  180
HSVLDPRTLA AVVFSCPDCD EVFVKPDSLE LHRSTRHAVS ELGADDTSRN IVEIIFQSSW  240
LKKNAPVCRI ERILKVQSSD KTIKRFEQHK EAVKEKARSA GDEAGRNPRC VADGNELLRF  300
HCTTFACSLG LAGGTALCCA SSSPPPLHCK LCSIIKDGFR VDGNGRITTM ATSGRAHDTA  360
EVSPDGEKRA MLVCRVVAGR VKKLHSSNSS EDHDCDSVSP CSEGVYSDLD ELFVFSPRAI  420
LPCFVVIYSG Y*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18598SGGGGGGDGGGGGS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329961570.0
Expression AtlasQ53JG9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g06840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g06840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1109480.0AK110948.1 Oryza sativa Japonica Group cDNA clone:002-173-H08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616600.10.0PREDICTED: uncharacterized protein LOC4349886
TrEMBLQ53JG90.0Q53JG9_ORYSJ; Zinc finger, C2H2 type family protein, expressed
STRINGLOC_Os11g06840.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6611439
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.13e-79C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]