PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g06770.1
Common NameOs11g0168500, OSNPB_110168500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 262aa    MW: 27261.2 Da    PI: 6.9609
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g06770.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-2073122255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++ a+++++g
  LOC_Os11g06770.1  73 RYRGVRQRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAARAYDDAALRFRG 122
                       8********.**********64....55************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003807.9E-3673136IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2273131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-3273131IPR001471AP2/ERF domain
PfamPF008471.4E-1373122IPR001471AP2/ERF domain
PROSITE profilePS5103225.51573130IPR001471AP2/ERF domain
PRINTSPR003675.2E-127485IPR001471AP2/ERF domain
CDDcd000184.42E-1679132No hitNo description
PRINTSPR003675.2E-1296112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MTIFKMNHNI SLISFTIAFS TLFRLDFAEH AAAMAAGQYA PATSSAMASP REQASSPSSG  60
DAAGGGGGGG RKRYRGVRQR PWGKWAAEIR DPVKAARVWL GTFDTAEAAA RAYDDAALRF  120
RGCRAKLNFP EDAALLPPPP PPPAPAPAPP QSQGMVGVGE EYSEYARFLQ GAGEPPHFLE  180
QIMEDSPRPS TAAGASSSSS GQSSFPLFYS FAGHELGGNE ANLARPPESG GAGGDGGRGS  240
SPPVTWPGYG WGAPPPWDPS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2372130463ATERF1
3gcc_A7e-2372130463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16975GRKRYRG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.744850.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166310360.0
Expression AtlasA0A0P0XZC3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g06770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g06770
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1478120.0AC147812.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence.
GenBankAC1205270.0AC120527.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0011J22 map R10571S, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617618.11e-162PREDICTED: ethylene-responsive transcription factor ERF110
TrEMBLA0A0P0XZC30.0A0A0P0XZC3_ORYSJ; Os11g0168500 protein
STRINGLOC_Os11g06770.21e-161(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-24ethylene response factor 110