PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g06410.1
Common NameLOC4349866, Os11g0163500, OSNPB_110163500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 484aa    MW: 55062.9 Da    PI: 6.7117
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g06410.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.66.1e-27162258186
          trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyf 82 
                       +Wt+++v++Li+a+++++e+ +++           +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++
  LOC_Os11g06410.1 162 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLL 254
                       7*********************8744455667777**********************************************55********** PP

          trihelix  83 dqle 86 
                       d+++
  LOC_Os11g06410.1 255 DHMD 258
                       **97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.8E-20160283No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSILLWLSHV LLKLHYLRLY SCASSCTPVS ILYGTNKKLK CLGDRFGEME GSNPPGNMTQ  60
GPSYGSLDLH GISKQMHPPN SGNQGFNQPQ IPGNFTIPMD RVTEPDNISD GVQLGQHGKI  120
AHHHHHHRHH SKNHGSDEEE HDMNEDAADG KDKKGSPWHR MKWTDSMVKL LITAVSYTGE  180
DPGADLGGGR RNYSMMQKKG KWKAISKVMG ERGCHVSPQQ CEDKFNDLNK RYKRLTDILG  240
RGTACNVVEN HSLLDHMDIS EKMKEDARKI LNSKHLFYEE MCSYHNNNRI SLPEDPALQQ  300
SLQLALRCKE DNDFMRHASG DAELDDDQSE DSDYEENEEE HRAVDTNIRG PSMHKRMWHV  360
VDHGDVGFVT SCSNDGSGRS DPYDVLDINK PFPDGCDLAL VQKDLALKAA EIQKHRLQIE  420
TKAVQLAKQR LKWEMFRKNK DLELEKLALE NEQMMLQNKR FELDLRHKEL ELEIKIKGNA  480
NHP*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.877680.0callus| flower| leaf| panicle| seed| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329863630.0
Expression AtlasQ53PP7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g06410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g06410
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1011540.0AK101154.1 Oryza sativa Japonica Group cDNA clone:J033027D16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615140.10.0PREDICTED: uncharacterized protein LOC4349866 isoform X1
RefseqXP_015615141.10.0PREDICTED: uncharacterized protein LOC4349866 isoform X1
TrEMBLQ53PP70.0Q53PP7_ORYSJ; Expressed protein
STRINGLOC_Os11g06410.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-92sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]