PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g06170.2
Common NameOs11g0160500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 201aa    MW: 22517.2 Da    PI: 9.4183
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g06170.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1346.6e-113694563
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
                      kr++r   NR +A rs +RK +++ eLe+kv++L++e ++L  +l  l+   + l++e+
  LOC_Os11g06170.2 36 KRAKRILANRQSAARSKERKIKYTGELERKVQTLQTEATTLSTQLTLLQRDTSGLTAEN 94
                      9**********************************************999988888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.5E-153296IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.8643497IPR004827Basic-leucine zipper domain
PfamPF001701.3E-93693IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.08E-113687No hitNo description
Gene3DG3DSA:1.20.5.1703.2E-113690No hitNo description
CDDcd147031.41E-153773No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009047anatomystem
PO:0007010developmental stagewhole plant fruit ripening stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MDGESSLFEG ESAPPDYAKK AMPADRLAEL ALLDPKRAKR ILANRQSAAR SKERKIKYTG  60
ELERKVQTLQ TEATTLSTQL TLLQRDTSGL TAENRELKLR LQSMEEQAKL RDALNDALRE  120
EVQRLKIAAG QVPNMNGNSF NGGLQQQQQQ QMPTYFSQQQ QMHYLSGHQG RHHHPNNPHN  180
SLNGGQSMSG QTLNDSMDFM *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.537320.0callus| leaf| panicle| root| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329848090.0
Expression AtlasQ84LF3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g06170.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g06170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8285020.0CT828502.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA011L18, full insert sequence.
GenBankAY2244250.0AY224425.1 Oryza sativa (japonica cultivar-group) isolate 20135 bZIP-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617778.11e-143PREDICTED: transcription factor VIP1
SwissprotQ9MA751e-59VIP1_ARATH; Transcription factor VIP1
TrEMBLQ84LF31e-146Q84LF3_ORYSJ; BZIP-like protein
STRINGORGLA11G0036500.11e-142(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.17e-47VIRE2-interacting protein 1
Publications ? help Back to Top
  1. Cooper B, et al.
    A network of rice genes associated with stress response and seed development.
    Proc. Natl. Acad. Sci. U.S.A., 2003. 100(8): p. 4945-50
    [PMID:12684538]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]