PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g05740.1
Common NameLOC4349821, Os11g0156000
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 280aa    MW: 30969.3 Da    PI: 7.1951
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g05740.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B390.41.4e-2838129187
                       EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                       f+k ltpsdv+k++rlv+pk++ae++     g    ++  l++ede g  W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ 
  LOC_Os11g05740.1  38 FEKPLTPSDVGKLNRLVIPKQHAERYfplgaGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRG 129
                       99****************************9666678899************************************************7642 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-4132154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-3035130IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-2737131No hitNo description
SMARTSM010191.3E-2138144IPR003340B3 DNA binding domain
PROSITE profilePS5086312.77438144IPR003340B3 DNA binding domain
PfamPF023625.1E-2638129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MAMNHPLFSQ EQPQSWPWGV AMYANFHYHH HYEKEHMFEK PLTPSDVGKL NRLVIPKQHA  60
ERYFPLGAGD AADKGLILSF EDEAGAPWRF RYSYWTSSQS YVLTKGWSRY VKEKRLDAGD  120
VVHFERVRGS FGVGDRLFIG CRRRGDAAAA QTPAPPPAVR VAPAAQNAGE QQPWSPMCYS  180
TSGGGSYPTS PANSYAYRRA ADHDHGDMHH ADESPRDTDS PSFSAGSAPS RRLRLFGVNL  240
DCGPEPEADT TAAATMYGYM HQQSSYAAMS AVPSYWGNS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-433514411117DNA-binding protein RAV1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.530190.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329805110.0
Expression AtlasQ53QI0-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g05740.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g05740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0704870.0AK070487.1 Oryza sativa Japonica Group cDNA clone:J023049E11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615108.10.0PREDICTED: B3 domain-containing protein Os11g0156000
SwissprotQ53QI00.0Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLB8BJ680.0B8BJ68_ORYSI; Putative uncharacterized protein
STRINGLOC_Os11g05740.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.21e-53B3 family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]