PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g05340.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1186aa    MW: 134883 Da    PI: 9.5618
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g05340.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.53.9e-27591682190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                       +fYn+YA+e GFsvrk++ ++ + +g i++r+f+Cs+eg+r+e   + ++++r+++a tr+gCka++++k+ + +g+w+v +++++HnH+l+
  LOC_Os11g05340.1 591 QFYNKYARERGFSVRKDYCRRDRFSGIIIHRRFTCSREGFRKELYMDvSNRSREPQALTRCGCKAQFEIKLYQkEGNWYVVRFVSKHNHPLC 682
                       6******************************************99987788999*****************999*****************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500967.5473665IPR000048IQ motif, EF-hand binding site
PfamPF031011.9E-25591682IPR004330FAR1 DNA binding domain
PfamPF105518.6E-37804898IPR018289MULE transposase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1186 aa     Download sequence    Send to blast
MAVATAAAGL DHAGSSRLDA EVSSPVAGSG GGGGGEDGAA TKLQKMYRSY RTRRKLADTA  60
VVVEELWWQA LDYARLSYST ISFHDPNPET VASRWSRVSI IASKVGQGLS RDAKARKLAF  120
QHWIEAIDPR HRYGHNLQCY YDVWCQSQAG QPFFYWLDIG EGKDVDLPEC PRAQLKKQCI  180
KYLGPQEREQ YEYIITKGKI IHKYSEEPLD TSQGSKWIFV MSTTKRLYAG KKEKGVFQHS  240
SFLAGGATIA AGRFTAENGV IKSIWAYSGH YKPSAENLSN FMNFLEENGV DLNNVSPITA  300
IIESNPPQLI LPQNMVLENK ASGSSSQVEG AEGDNAATEQ AKPTYQRTLS GGLQSPRATI  360
DVPRKAILER VKSKRESRSY QLGHKLSLKW STGAGPRIGC VKDYPMQLRM QALEMIETVV  420
AAVAVFPHPP SQRAAAAAGA SRVPAIASSP RGRRRIEGSG RRIEPPRPPS HRGFRPSPPP  480
PGVAYNSPPL ARHIGRRLHP APLAVASNRK TPASLGQLWN IDAAALAVST PSTAVHFLVE  540
AMHEVVTKVV ILIGRFTVLC AMEGGGSSIE EQEEYATIIG MKFPSELHGF QFYNKYARER  600
GFSVRKDYCR RDRFSGIIIH RRFTCSREGF RKELYMDVSN RSREPQALTR CGCKAQFEIK  660
LYQKEGNWYV VRFVSKHNHP LCKGDQVPFL RSHRRITPAE QAKMVELRDV GLHQHQVMDI  720
MERDHGGYEG TGFTSRDMYN FFVKLKKKRI KGGDADHVLK YMQARQKDDM EFYYDYEIDQ  780
AGCLKRLFWS DPQSRIDYDA FGDVVVFDST YRVNKYNLPF IPFVGVNHHG STVIFACAVV  840
SDERVETYEW VLRQFLTCMC QKHPKSVITD GDNAMRRAIL HVFPNSDHRL CTWHIEQNMA  900
RNLSPAMLSD FRTLVHSEFD EDEFERKWVE FKIKHKVSDD NKWLKRMYNL RKKWAATYTK  960
GRVFLSMKSN QRSESLNSKL HRLLDRKMSL VILVEHYEHC LSRIHHQEAE LDAKASQSVL  1020
SYLQLEAIPS FCIARRWTMQ AKSAFPSDRY GEVYTWSDQM ERYRQLRTVA SEAFFRCSMT  1080
EESTLKVMKM LDNLMLEDDC SANCDNFEIQ FGHVVRQSMR TDIESSEKVL DPELVVPKGA  1140
PTKRMRGFLE KRKRKLLSVH EDIRRLESEH GKLHEASTSQ VTNRI*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ53PZ5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g05340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g05340
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1203070.0AC120307.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0074E19 map R1938, complete sequence.
GenBankAC1169490.0AC116949.11 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBa0040B10 map R2918, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ53PZ50.0Q53PZ5_ORYSJ; Transposon protein, putative, unclassified
STRINGLOC_Os11g05340.10.0(Oryza sativa Japonica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-85FAR1-related sequence 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]