PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g04960.1
Common NameOs11g0146900, OsJ_32956, OSNPB_110146900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 452aa    MW: 50632.3 Da    PI: 4.3665
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g04960.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM95.96.2e-30371721128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka.eekewyfFskrdkkyat.gkrknra.....tksgyWkat 86 
                       lppG++F Ptdeelv++yL+ k+eg++ +  ++i+e +i++++P++L +k+k+ +e++wyfF+ r+ ++++ ++++nr+     +++g W+at
  LOC_Os11g04960.1  37 LPPGYHFVPTDEELVDFYLRGKIEGRDPPR-HFISEENIMRYDPQKLIEKYKGyGEDRWYFFMVREPSKTKkKDEPNRKvvvdgVEEGSWSAT 128
                       79*************************998.89**************8655553777*****9998776642779999656666679****** PP

               NAM  87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       g+  +++s+    +++ +g k++L++   +a+++e+  W mhey l
  LOC_Os11g04960.1 129 GSVVQIHSTketnRKAIIGSKRVLTYK--SARSAENDMWSMHEYVL 172
                       *******9866655666*********9..5666669********87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-3430189IPR003441NAC domain
PROSITE profilePS5100535.53137189IPR003441NAC domain
PfamPF023651.8E-1838172IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MNPTIENGGS GGDGSAAAAA AEGSAIWKSE LVPQLQLPPG YHFVPTDEEL VDFYLRGKIE  60
GRDPPRHFIS EENIMRYDPQ KLIEKYKGYG EDRWYFFMVR EPSKTKKKDE PNRKVVVDGV  120
EEGSWSATGS VVQIHSTKET NRKAIIGSKR VLTYKSARSA ENDMWSMHEY VLAGKSQMGQ  180
YVLCAIQLKQ TYEREEKARE EQKNDNKRNK KAARRKNMQQ QPTACQAQDE QQETAPTPGE  240
ETIVDPDQFM DIAHSMHMMF GGVDQDAPPF MPSLIAPCNN DDGMLQLQPL QLQNPNPAML  300
YSNQLEPSYI GDQSMFTPCC CDRNCISCRQ LQFYQQQQAE DGSVAFGEAD LYQQHDRALG  360
NTGVYPDNVW VDGNMADYAQ RQIYNDQDNG GVLMQGPEDS ATFPDNFLML DEMAAGSDDA  420
SGFDYEVDQS MAVVPHVADQ TVDDIMSSLL N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-173219112167NO APICAL MERISTEM PROTEIN
1ut4_B3e-173219112167NO APICAL MERISTEM PROTEIN
1ut7_A3e-173219112167NO APICAL MERISTEM PROTEIN
1ut7_B3e-173219112167NO APICAL MERISTEM PROTEIN
3swm_A3e-173219115170NAC domain-containing protein 19
3swm_B3e-173219115170NAC domain-containing protein 19
3swm_C3e-173219115170NAC domain-containing protein 19
3swm_D3e-173219115170NAC domain-containing protein 19
3swp_A3e-173219115170NAC domain-containing protein 19
3swp_B3e-173219115170NAC domain-containing protein 19
3swp_C3e-173219115170NAC domain-containing protein 19
3swp_D3e-173219115170NAC domain-containing protein 19
4dul_A3e-173219112167NAC domain-containing protein 19
4dul_B3e-173219112167NAC domain-containing protein 19
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2RAL8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g04960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g04960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235260.0AC123526.2 Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBa0059J06, complete sequence.
GenBankBX0004990.0BX000499.1 Oryza sativa chromosome 11, . BAC OSJNBa0039D03 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697555.11e-96PREDICTED: putative NAC domain-containing protein 94
TrEMBLQ2RAL80.0Q2RAL8_ORYSJ; No apical meristem protein, expressed
STRINGLOC_Os11g04960.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1208335
MonocotsOGMP115562137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-22NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]