PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g03540.1
Common NameLOC9266656
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 450aa    MW: 49777.6 Da    PI: 4.5427
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g03540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.2e-1382142155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++   ++ k+ ++  lg ++++e Aa+a++ a++k++g
  LOC_Os11g03540.1  82 SIYRGVTRHRWTGRFEAHLWDkNCStslQNkKKgRQGCLGAYDSEEAAARAYDLAALKYWG 142
                       57*******************8777777445446*************************98 PP

2AP255.81.1e-17185237156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       s+y+GV +++ +grW+A+I  +     +k+ +lg+f+t eeAaka++ a+ +++g+
  LOC_Os11g03540.1 185 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 237
                       89****99**********988422...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-1182142IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1682151IPR016177DNA-binding domain
CDDcd000181.48E-1082150No hitNo description
PROSITE profilePS5103219.50683150IPR001471AP2/ERF domain
SMARTSM003809.0E-2683156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-1583151IPR001471AP2/ERF domain
PRINTSPR003673.7E-68495IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-18185246IPR016177DNA-binding domain
PfamPF008474.4E-13185236IPR001471AP2/ERF domain
CDDcd000182.74E-26185246No hitNo description
PROSITE profilePS5103218.993186244IPR001471AP2/ERF domain
SMARTSM003805.3E-27186250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-19186244IPR001471AP2/ERF domain
PRINTSPR003673.7E-6226246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006110Biological Processregulation of glycolytic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0019432Biological Processtriglyceride biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MAKRSSPDPA SSSPSASSSP SSPSSSSSED SSSPMSMPCK RRARPRTDKS TGKAKRPKKE  60
SKEVVDPSSN GGGGGGGGKR SSIYRGVTRH RWTGRFEAHL WDKNCSTSLQ NKKKGRQGCL  120
GAYDSEEAAA RAYDLAALKY WGPETVLNFP LEEYEKERSE MEGVSREEYL ASLRRRSSGF  180
SRGVSKYRGV ARHHHNGRWE ARIGRVLGNK YLYLGTFDTQ EEAAKAYDLA AIEYRGANAV  240
TNFDISCYLD QPQLLAQLQQ EPQLLAQLQQ ELQVVPALHE EPQDDDRSEN AVQELSSSEA  300
NTSSDNNEPL AADDSAECMN EPLPIVDGIE ESLWSPCLDY ELDTMPGAYF SNSMNFSEWF  360
NDEAFEGGME YLFEGCSSIT EGGNSMDNSG VTEYNLFEEC NMLEKDISDF LDKDISDFLD  420
KDISISDRER ISPQANNISC PQKMISVCN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.166830.0callus| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977279320.0
Expression AtlasQ2RB16-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g03540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g03540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2476260.0AB247626.1 Oryza sativa Japonica Group OsANTL mRNA for aintegumenta-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015617951.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ6X5Y62e-94WRI1_ARATH; Ethylene-responsive transcription factor WRI1
TrEMBLQ2RB160.0Q2RB16_ORYSJ; AP2 domain containing protein, expressed
STRINGLOC_Os11g03540.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
MonocotsOGMP55263557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.36e-74AP2 family protein
Publications ? help Back to Top
  1. Ye R,Yao QH,Xu ZH,Xue HW
    Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development.
    Plant J., 2004. 38(2): p. 348-57
    [PMID:15078336]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]