PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g03540.1
Common NameLOC9266656
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family AP2
Protein Properties Length: 450aa    MW: 49777.6 Da    PI: 4.5427
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g03540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.47.2e-1382142155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse...ng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++   ++ k+ ++  lg ++++e Aa+a++ a++k++g
  LOC_Os11g03540.1  82 SIYRGVTRHRWTGRFEAHLWDkNCStslQNkKKgRQGCLGAYDSEEAAARAYDLAALKYWG 142
                       57*******************8777777445446*************************98 PP

2AP255.81.1e-17185237156
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       s+y+GV +++ +grW+A+I  +     +k+ +lg+f+t eeAaka++ a+ +++g+
  LOC_Os11g03540.1 185 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFDTQEEAAKAYDLAAIEYRGA 237
                       89****99**********988422...5*************************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-1182142IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1682151IPR016177DNA-binding domain
CDDcd000181.48E-1082150No hitNo description
PROSITE profilePS5103219.50683150IPR001471AP2/ERF domain
SMARTSM003809.0E-2683156IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-1583151IPR001471AP2/ERF domain
PRINTSPR003673.7E-68495IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-18185246IPR016177DNA-binding domain
PfamPF008474.4E-13185236IPR001471AP2/ERF domain
CDDcd000182.74E-26185246No hitNo description
PROSITE profilePS5103218.993186244IPR001471AP2/ERF domain
SMARTSM003805.3E-27186250IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-19186244IPR001471AP2/ERF domain
PRINTSPR003673.7E-6226246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description