PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g02964.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 472aa    MW: 53469.9 Da    PI: 9.3702
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g02964.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.83.1e-17312399191
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle.leHnHel 89 
                       +fY++YA+++GF++rks++kk+        r+ +Cs+eg+++  k ++ +++r++ +++tgCka +kvk+     +   +v++++ leHnH+l
  LOC_Os11g02964.1 312 DFYEKYAYHAGFDIRKSRTKKT-------IREICCSREGHHKFYKGDEFERERNHRTKKTGCKAYMKVKNVMvdgEVSSVVYDVVvLEHNHPL 397
                       6***************998776.......6899**********9999999999****************987743333455554349*****9 PP

              FAR1  90 ap 91 
                       +p
  LOC_Os11g02964.1 398 TP 399
                       86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-12312399IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MERPAVAVAR GALAVSARAG CWSASELTSM TAWRSALRRV ILPWGRATRA EALPHRRRRL  60
GCKGLCRRPR RAPPSAVEKL RRLERLGRPN TNYPITSLTP GGTHNSSVIT RATEVYASHL  120
LQSGILNYSD LGDEKGDGSS QPPWWQVAGE KGEFSSVERH RSRQVNRCKI ETHLIAGESR  180
PGADLRCSYQ SLSVENEAKQ LYITICDCSQ DCKDGPTGEE LTEHIIWCKV CKNIFKMTGT  240
LPHWVSNGIK GGNWPHFNAR SFSKVVTNHC FKQNDNRLIG LLFTARHMFS GLDDDMVPKQ  300
NMVFKDYDSV YDFYEKYAYH AGFDIRKSRT KKTIREICCS REGHHKFYKG DEFERERNHR  360
TKKTGCKAYM KVKNVMVDGE VSSVVYDVVV LEHNHPLTPS LAAVKHMRSH KHTDDTIMEF  420
VNTMQENRVA QNSLIGVLAD MHGGQENIPF TSRNLENRFV SCICHLPIEL H*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.273071e-147callus| leaf
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasH2KWC1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g02964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g02964
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1507750.0AC150775.1 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0048P17,complete sequence.
GenBankAC1369700.0AC136970.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0074L01, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLH2KWC10.0H2KWC1_ORYSJ; Uncharacterized protein
STRINGLOC_Os11g02964.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP76091043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.18e-09FAR1-related sequence 11
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]