PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g02540.1
Common NameLOC4349612, Os11g0117600, OsJ_32733
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 330aa    MW: 35577.6 Da    PI: 6.5002
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g02540.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.22.9e-22131191359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE.EEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv.veitYegeHnhe 59 
                       Dgy+WrKYGqK+++g+ +prsYYrCt +   gC +kk v+r+   + +  ++ Y +eH+++
  LOC_Os11g02540.1 131 DGYQWRKYGQKQIEGALYPRSYYRCTNStnqGCLAKKTVQRNGGGGAAgYTVAYISEHTCK 191
                       9************************9888889**********98776537899*****997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.4E-24114192IPR003657WRKY domain
SuperFamilySSF1182903.01E-21122191IPR003657WRKY domain
SMARTSM007746.5E-31129192IPR003657WRKY domain
PROSITE profilePS5081119.405131172IPR003657WRKY domain
PfamPF031062.9E-22131191IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020104anatomyleaf sheath
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MEEAYCMMMV GRERELVAEL RHLLFPSPSP TPTTPASHST TALAGDGECC LPPGLTTTTT  60
VSGGGRRRGR KRVNRDNDNV KLLLQADDDQ EAVIADHGDA NAKPLPNFTK TRRRKQQATT  120
STMVTTVPDF DGYQWRKYGQ KQIEGALYPR SYYRCTNSTN QGCLAKKTVQ RNGGGGAAGY  180
TVAYISEHTC KSIEPSLPPV ILDTTVRTTN NHQQPAAAES PAATSSSSSN MVMTSSETGN  240
WSGQHGAYAC RQMIAADEEY CCWDTPATTT TTSGSNGGNS TCAEDIELLS RPIRSPMHIA  300
AEGNWMDDLL LVTDGLIVIS NSSITHFLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110115TRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.825100.0leaf
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154838600.0
Expression AtlasQ2RBB7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g02540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g02540
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235140.0AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616434.10.0PREDICTED: probable WRKY transcription factor 33
TrEMBLQ2RBB70.0Q2RBB7_ORYSJ; Os11g0117600 protein
STRINGLOC_Os11g02540.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1314045
MonocotsOGMP57603058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-15WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]