PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g02520.1
Common NameLOC4349611
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 281aa    MW: 31661.6 Da    PI: 6.2248
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g02520.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY58.81e-18122186259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 
                       +Dg++WrKYGqK +  ++++rsYYrC+ +   gCp++k v++ ++ +    k++++ Y g+H+++
  LOC_Os11g02520.1 122 NDGHQWRKYGQKWISRAKHSRSYYRCANSkvqGCPATKTVQQMDSSGngtsKLFNVDYYGQHTCR 186
                       8*************************9887889********99876522226899*******995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.5E-22107186IPR003657WRKY domain
PROSITE profilePS5081114.665116163IPR003657WRKY domain
SuperFamilySSF1182901.28E-19117186IPR003657WRKY domain
SMARTSM007741.2E-28121187IPR003657WRKY domain
PfamPF031068.7E-22122186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKILESFGHS DCQVVINMIE HQKALMVELR GMVMPLLPSD NEQAKLALQL LGDILSCSDK  60
AISMLELGGD TKKLTNLVGG KRKGDKHSMD NHNLEEEAKE SVSKRRKNAE HTGSTVAQAP  120
HNDGHQWRKY GQKWISRAKH SRSYYRCANS KVQGCPATKT VQQMDSSGNG TSKLFNVDYY  180
GQHTCRGDGI ADPYVVDTAH HSMEPINQNE CNSPTLEHEA HEVQDERFEN LCMVQNMPEY  240
LIDFELERAF EFIVNSPLGS EHWTFDDSIR CEHSPICIWG *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.148820.0callus| flower| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154870150.0
Expression AtlasQ2RBB9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g02520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g02520
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7811120.0AY781112.1 Oryza sativa (indica cultivar-group) WRKY DNA-binding protein (WRKY89) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616437.10.0PREDICTED: probable WRKY transcription factor 67
TrEMBLQ2RBB90.0Q2RBB9_ORYSJ; WRKY DNA binding domain containing protein, expressed
TrEMBLA0A0E0IXG00.0A0A0E0IXG0_ORYNI; Uncharacterized protein
STRINGLOC_Os11g02520.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1240236
MonocotsOGMP133251529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.19e-19WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]