PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os11g02470.1
Common NameLOC107277470, OsJ_32729
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 336aa    MW: 37202.4 Da    PI: 5.6568
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os11g02470.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.13.7e-23141202259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-.SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkvers.aedpkvveitYegeHnhe 59 
                       +Dg++WrKYG K+++g++f+rsY+rCt++   gC+++k+++++ ++dp ++++tY++eH+++
  LOC_Os11g02470.1 141 EDGFQWRKYGEKKIQGTHFTRSYFRCTYRddrGCQATKQIQQKdKNDPPMFQVTYSNEHTCT 202
                       8***************************99999*******8761679*************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-23133202IPR003657WRKY domain
SuperFamilySSF1182901.7E-21134202IPR003657WRKY domain
SMARTSM007745.2E-33140203IPR003657WRKY domain
PROSITE profilePS5081117.167141204IPR003657WRKY domain
PfamPF031066.5E-25141201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MAVTESACLS YEQEAVAVRE VAQVYELIKT QQPLLLVHQQ PQQLAHGLLN HALRALNVAL  60
SVMNQPHASS SAAAAAVPVM SLIKAEAATP ANSSSPAADV AADNHVVGKP RRSSSAAKRR  120
RINGEEYKSS SWSQFTPVPH EDGFQWRKYG EKKIQGTHFT RSYFRCTYRD DRGCQATKQI  180
QQKDKNDPPM FQVTYSNEHT CTTTRLINNI NNPAALHNLT ANPNGHHDSD DDDTIFTKMI  240
KQEEQAAWLP PPPPADLATI SNNFDETPGL HVCQEVPPSS SNSSVISHYA DEFDHHQMLE  300
TTVMEEALGL GADLDDPYFY DPNLLLIYES LMNCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117121KRRRI
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2RBC4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os11g02470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs11g02470
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1235140.0AC123514.2 Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0004B05, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616433.10.0PREDICTED: probable WRKY transcription factor 70
TrEMBLQ2RBC40.0Q2RBC4_ORYSJ; Uncharacterized protein
STRINGLOC_Os11g02470.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1362235
MonocotsOGMP50452663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.23e-20WRKY family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]