PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g42430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 752aa    MW: 80993.8 Da    PI: 6.5183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g42430.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12576621454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  LOC_Os10g42430.1 576 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 621
                       799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.7E-51120300IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39572621IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-14575625No hitNo description
SuperFamilySSF474592.75E-18575648IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-18576643IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.1E-10576621IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-16578627IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MWVLLSPLLT TKNPFHPIPI PTFPLLLFSS SLVGVLFQIK SNLEEEEIEI KSMNLWTDDN  60
ASMMEAFMAS ADLPAFPWGA ASTPPPPPPP PHHHHQQQQQ QVLPPPAAAP AAAAFNQDTL  120
QQRLQSIIEG SRETWTYAIF WQSSIDVSTG ASLLGWGDGY YKGCDDDKRK QRSSTPAAAA  180
EQEHRKRVLR ELNSLIAGAG AAPDEAVEEE VTDTEWFFLV SMTQSFPNGL GLPGQALFAA  240
QPTWIATGLS SAPCDRARQA YTFGLRTMVC LPLATGVLEL GSTDVIFQTG DSIPRIRALF  300
NLSAAAASSW PPHPDAASAD PSVLWLADAP PMDMKDSISA ADISVSKPPP PPPHQIQHFE  360
NGSTSTLTEN PSPSVHAPTP SQPAAPPQRQ QQQQQSSQAQ QGPFRRELNF SDFASNGGAA  420
APPFFKPETG EILNFGNDSS SGRRNPSPAP PAATASLTTA PGSLFSQHTP TLTAAANDAK  480
SNNQKRSMEA TSRASNTNNH PAATANEGML SFSSAPTTRP STGTGAPAKS ESDHSDLEAS  540
VREVESSRVV APPPEAEKRP RKRGRKPANG REEPLNHVEA ERQRREKLNQ RFYALRAVVP  600
NVSKMDKASL LGDAISYINE LRGKLTALET DKETLQSQME SLKKERDARP PAPSGGGGDG  660
GARCHAVEIE AKILGLEAMI RVQCHKRNHP AARLMTALRE LDLDVYHASV SVVKDLMIQQ  720
VAVKMASRVY SQDQLNAALY TRIAEPGTAA R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A5e-621153034195Transcription factor MYC3
4rqw_B5e-621153034195Transcription factor MYC3
4rs9_A5e-621153034195Transcription factor MYC3
4yz6_A5e-621153034195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1557565KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.1004840.0leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567646970.0
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g42430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g42430
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0607550.0AC060755.9 Oryza sativa chromosome 10 BAC OSJNBa0003O19 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614012.10.0PREDICTED: transcription factor MYC2
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A0E0R2V00.0A0A0E0R2V0_ORYRU; Uncharacterized protein
STRINGLOC_Os10g42430.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP37331224
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-130bHLH family protein