PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g34884.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 1203aa    MW: 139015 Da    PI: 7.6792
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g34884.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1842.4e-26493590291
              FAR1   2 fYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                       f+n+YA+ +GFsv++++++k+   kr+geitk+t++C+ +gk+e+ +kk      te++r+t +  +t+Ck++++ k+   + w++++l+l+H
  LOC_Os10g34884.1 493 FFNFYAYLAGFSVVIAHHYKTtskKRQGEITKYTYKCNLQGKNEPANKKksneqvTEQQRETVVLVKTNCKCTMVAKEV-GQFWQISRLDLNH 584
                       9*******************999999******************99999999*999999***************99998.************* PP

              FAR1  86 nHelap 91 
                       nH+l+p
  LOC_Os10g34884.1 585 NHALCP 590
                       ****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.40.102.1E-7273IPR009009RlpA-like protein, double-psi beta-barrel domain
SuperFamilySSF506851.36E-8373IPR009009RlpA-like protein, double-psi beta-barrel domain
PfamPF031015.4E-25493590IPR004330FAR1 DNA binding domain
PfamPF105513.9E-37685779IPR018289MULE transposase domain
PROSITE profilePS509669.2119721008IPR007527Zinc finger, SWIM-type
SMARTSM005755.0E-49831010IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1203 aa     Download sequence    Send to blast
MARCGHRVRI TASGGSGRSV VAKVVDECDS VHGCDGEHNY EPPCDNNIVD ASPAVWDALG  60
LDKSVGMEHI TWSDDGDESK VRSKKIDMES EKKKAKKKRE EEEPKSKIKS EEKIKTSRSK  120
QGMKFTEPVR IGPLEKKELN SISEHKQKVS FETQGNKQNH MKQNAGIRIM PYAEPNENSK  180
SITQGSKEGN NKTIQSGTNI HQLQDGERSL KESERNKIDT KHTEETSSSI TQITGIGTTQ  240
SPQSPALLHD ELTMLKSHTT PVAQLSYTSL MHQVINSPRI NIEPNMGGRG LESFTSMLQT  300
PSAYNNSMIL TTSRVCEQDM LLEDRNNDLL IPSKHYSYQE FDEIYNSARI TPEIPVDKTM  360
EELYKLQNTH LKSQATYQKF IVRDICREFL QAGPLRTEIK RTLKPYNENF HEQDIEEQQT  420
RPEATEISGI QQQQTEAEMN DNLNSATNNG EELSEEDIDN FLQNEEESSL PIDDKHIPKL  480
GMKFKSHTEA RGFFNFYAYL AGFSVVIAHH YKTTSKKRQG EITKYTYKCN LQGKNEPANK  540
KKSNEQVTEQ QRETVVLVKT NCKCTMVAKE VGQFWQISRL DLNHNHALCP RREAKFLRSH  600
KDMTEEEKRL IRTLKECNIP TRSMIVILSF LRGGLAALPY TKKDKKEQDD PGMYYKFKLD  660
EENKVTSMFW TDGRSTQLYE EYGDCISFDT TYRTNRYNMP FAPFVGVTGH GSTCLFGCAF  720
LGDETAETFK WVFETFITAM GGKHPKTIIT DQDNAMRSAI AQVFQNTKHR NCLFHIKKNC  780
REKIGSMFSA KANRNLYEEY DDILNNCLTE EEFEVLWPQM IEKFSLQNIK YLQLMWKNRA  840
QFVPVYFKYD FCPFIQSTAL SEGTNSRFKR GVGPQHSVMS FMKEYENIND TIFDTEYSKD  900
FQSRTKMPKT LWFNYLIEEQ ASELYNLDIF RKFQNELKDT LRLQVSVIQQ GKVYEVFVSP  960
NSIQQEYRQR KHIVIIDLPN ENFGCICGKF SKDGMLCSHI LKVMLELNVR KIPEKYIIDR  1020
WRKKEKKEKV KGSIHTDATD NSVLMFNVLS RKGADIASKA SKRKRTYQFM MEELEKLEMN  1080
VQLMIEQEAE THLSQDESNT VQNDTVQHAE EEIIEEVEIE DPDLANTKGR KPKRYRRIVE  1140
KMIETSKRKS KDEQHTTETR TSEITNIGNK QEEMKTSKTT KRRKKNNTQE ETPKEKLHAK  1200
TS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4x9u_A2e-25273118187Kiwellin
4x9u_B2e-25273118187Kiwellin
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ109H5
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g34884.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g34884
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0232400.0AC023240.9 Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015648733.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015648734.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015648736.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015648737.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_015648738.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ109H50.0Q109H5_ORYSJ; Transposon protein, putative, unclassified, expressed
STRINGLOC_Os10g34884.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP1502635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-85FAR1-related sequence 5