PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g30840.1
Common NameOsJ_31688
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 125aa    MW: 13306.5 Da    PI: 9.41
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g30840.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.69.8e-211162155
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      ++y+GVr+++ +g+++AeIrdp  +   +r++lg+f+taeeAa+a+++a+ + +g
  LOC_Os10g30840.1 11 TKYRGVRRRP-WGKFAAEIRDPERG--GARVWLGTFDTAEEAARAYDRAAYAQRG 62
                      69********.**********8333..4***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.09E-151148No hitNo description
PfamPF008479.3E-151162IPR001471AP2/ERF domain
PROSITE profilePS5103224.4211270IPR001471AP2/ERF domain
SMARTSM003801.9E-311276IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.9E-311271IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-231271IPR016177DNA-binding domain
PRINTSPR003673.8E-121324IPR001471AP2/ERF domain
PRINTSPR003673.8E-123652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MEDNRSKDTA TKYRGVRRRP WGKFAAEIRD PERGGARVWL GTFDTAEEAA RAYDRAAYAQ  60
RGAAAVLNFP AAAAAGRGGG AGGAASGSSS SSSAQRGRGD KIEFEYLDDK VLDDLLDDEK  120
YRGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-271276569ATERF1
3gcc_A3e-271276569ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329929541e-46
Expression AtlasA3C573-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g30840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g30840
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0259070.0AC025907.2 Oryza sativa Japonica Group cultivar japonica chromosome 10 clone nbxb0094K20, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614004.13e-82PREDICTED: ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC53e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA3C5736e-83A3C573_ORYSJ; Uncharacterized protein
STRINGBGIOSGA031822-PA8e-82(Oryza sativa Indica Group)
STRINGLOC_Os10g30840.18e-82(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP2188377
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.11e-16ERF family protein