PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g28330.1
Common NameEhd2, LOC4348644, Os10g0419200, OSNPB_100419200, RID1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 410aa    MW: 44267.4 Da    PI: 8.0487
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g28330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.81.9e-053961123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      ++C+ C+k F r  nL+ H r H
  LOC_Os10g28330.1 39 FVCEVCNKGFQRDQNLQLHRRGH 61
                      89*******************88 PP

2zf-C2H213.30.00026124146123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk++  +s+ k H +++
  LOC_Os10g28330.1 124 WRCERCGKRYAVHSDWKAHVKNC 146
                       58******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.42E-73861No hitNo description
Gene3DG3DSA:3.30.160.608.3E-63861IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.973961IPR007087Zinc finger, C2H2
PfamPF121717.5E-53961IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0213961IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM003558989119IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.2E-4112144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.42E-7119144No hitNo description
SMARTSM0035599124144IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009072anatomyplant ovary
PO:0007042developmental stagewhole plant fruit formation stage
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MAAAQEPRAK KKRSLPGNPD PEAEVIALSP RALVATNRFV CEVCNKGFQR DQNLQLHRRG  60
HNLPWKLRHR AAAVSAVTTA APAPRKRVYV CPEPTCVHHD PARALGDLTG IKKHFSRKHG  120
EKRWRCERCG KRYAVHSDWK AHVKNCGTRE YRCDCGILFS RKDSLLTHRA FCDALAEESA  180
RLLAAANNSS SITTTTCNNS NISSNNNNNN INSISNSNNL LITSSSSSPP LFLPFSTTPA  240
ENPNPNQLLF LQQHQAAHHQ LLLPQFQQPP SSPPAYFDHL AFGGGGGVIT GSSCNDDNSS  300
IAGDVMVAAG GDSVSFGLTS EGSVTMHAGD VGRRRLTRDF LGVDHDAGEV DELELDELPA  360
DLSTTAAACQ GCNFAAATTA ACCATDFTTG SRQYLGRLPP VNETWSHNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.632820.0flower| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2000963920.0
Expression AtlasB1B534-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00673SELEXTransfer from GRMZM2G011357Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g28330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g28330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0095780.0FJ009578.1 Oryza sativa Japonica Group cultivar Zhonghua 11 Cys2/His2-type zinc finger transcription factor (RID1) mRNA, complete cds.
GenBankAB3591960.0AB359196.1 Oryza sativa Japonica Group Ehd2 mRNA for early heading date 2, complete cds, cultivar: Tohoku IL9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614407.10.0PREDICTED: protein indeterminate-domain 12
SwissprotO227591e-100IDD12_ARATH; Protein indeterminate-domain 12
SwissprotQ944L31e-100IDD9_ARATH; Protein indeterminate-domain 9
TrEMBLA0A0E0QZ670.0A0A0E0QZ67_ORYRU; Uncharacterized protein
TrEMBLB1B5340.0B1B534_ORYSJ; Cys2/His2-type zinc finger transcription factor
STRINGLOC_Os10g28330.10.0(Oryza sativa Japonica Group)
STRINGORGLA10G0088000.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9516242
MonocotsOGMP130962832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.13e-91C2H2 family protein
Publications ? help Back to Top
  1. Wu C, et al.
    RID1, encoding a Cys2/His2-type zinc finger transcription factor, acts as a master switch from vegetative to floral development in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(35): p. 12915-20
    [PMID:18725639]