PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g27360.1
Common NameLOC4348616, Os10g0413700, OSNPB_100413700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 422aa    MW: 44968.9 Da    PI: 5.8521
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g27360.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM77.33.6e-24221492127
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya...tgkrknratksgyWkatg 87 
                       p+GfrF P+d+el+ + L  k++g +    l+ v+++++i++++P +L  + ++ ee+  +yfFs+ + k+a   ++k ++ra++ g+Wka  
  LOC_Os10g27360.1  22 PRGFRFVPRDQELL-DILDDKLRGAPldRALDAVFHDTRILDFHPAKLYgMYAEDEENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKAVL 113
                       89************.88*********53333456**************83344444443459**998777663335778899********886 PP

               NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127
                        + ++++ +g  vg k ++ fy     kg++t+W mhe+ 
  LOC_Os10g27360.1 114 GSSQMVEVGGVPVGRKLSMEFY----VKGVRTNWGMHEFV 149
                       66666666**************....899*********95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-3016167IPR003441NAC domain
PROSITE profilePS5100524.92621169IPR003441NAC domain
PfamPF023652.0E-1222148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MAAPGDGEEK KAGSGRNKHG FPRGFRFVPR DQELLDILDD KLRGAPLDRA LDAVFHDTRI  60
LDFHPAKLYG MYAEDEENGY IYFFSTIEFK AAKPKQKKWP RRAAQGGRWK AVLGSSQMVE  120
VGGVPVGRKL SMEFYVKGVR TNWGMHEFVR IIGPNIEVAD LAVYRLHKLW TNGEEKPGDL  180
AADVAKSTNQ SGQASAADYY QTYQNAVSQA YAYAPPYVLQ PGWSQGYPYD VAAAPPTAPW  240
PVCWAPPSAP GSYDCCYAST FSRPPPPPPI AASTLDKAPI TSTDHGASTN TSAATPVANN  300
KPPPPPVAAT ATTLGKKGEG KGKAPTTTST DHAGSTNTSA PPAANYQPPP TTTTPPLQGT  360
QHVFAPGVVV GHEDEEGYLI VDEVNTWRNT QQLVLEDDDD DDDGRAAGAG AGEGGASASG  420
R*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154819990.0
Expression AtlasQ7XEN9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g27360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g27360
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099040.0AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.10.0PREDICTED: uncharacterized protein LOC4348616
TrEMBLA0A0E0QZ290.0A0A0E0QZ29_ORYRU; Uncharacterized protein
TrEMBLQ7XEN90.0Q7XEN9_ORYSJ; No apical meristem protein, expressed
STRINGLOC_Os10g27360.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP985338
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-11NAC domain containing protein 3