PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g26590.1
Common NameOSJNBa0060A14.8
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 228aa    MW: 24478.5 Da    PI: 7.2963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g26590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP232.32.5e-101765255
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +ykGV +   +grW+  I   +      +r+ +g +gt+eeAa a+++a +++ g
  LOC_Os10g26590.1 17 KYKGVAR-TADGRWRGFITNkF-----GRRYGVGDHGTPEEAALAHDRAILAILG 65
                      8****95.559****8877744.....5*********************998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.18E-151778No hitNo description
PROSITE profilePS5103211.8381776IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-91775IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.4E-91776IPR001471AP2/ERF domain
PfamPF008472.8E-71764IPR001471AP2/ERF domain
SMARTSM003800.00181782IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MAGDGTGDDD DVHARVKYKG VARTADGRWR GFITNKFGRR YGVGDHGTPE EAALAHDRAI  60
LAILGAHASP AALNFRAAFS DTELRFLRGP HAPSRRAAGV VAAVMRGAAF DAALERFAAR  120
AYDAHTDPEL ALDVAAFRLA TRDAGTPLAQ PDAERAAFVA AARNKVHDAA WLRSYLRRRR  180
LVGATFEDEN RWPPVVPPAV ADVGDGFAGN ELVYLPYGSC HVDEMMI*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ948I8
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g26590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g26590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0218930.0AC021893.18 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0060A14, from chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464640.13e-70hypothetical protein SORBIDRAFT_01g022380
TrEMBLA0A0E0GN161e-160A0A0E0GN16_ORYNI; Uncharacterized protein
TrEMBLA0A0E0QYW31e-160A0A0E0QYW3_ORYRU; Uncharacterized protein
TrEMBLA2Z7391e-160A2Z739_ORYSI; Uncharacterized protein
TrEMBLQ948I81e-160Q948I8_ORYSJ; AP2 domain containing protein
STRINGBGIOSGA032886-PA1e-160(Oryza sativa Indica Group)
STRINGLOC_Os10g26590.11e-160(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1911022
MonocotsOGMP150581718