PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g25220.1
Common NameOs10g0391300, OsJ_030157, OsJ_31392, OSJNBb0061I18.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 703aa    MW: 81200.6 Da    PI: 8.8673
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g25220.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.51.1e-08683700926
                       GGGTS--TTTTT-SS-SS CS
           zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                       +++ G+C+yG++CkF+H+
  LOC_Os10g25220.1 683 YQQQGWCPYGENCKFMHD 700
                       8999*************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.307.2E-5124163IPR003034SAP domain
PROSITE profilePS5010314.352674702IPR000571Zinc finger, CCCH-type
SMARTSM003560.0015676701IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6676701IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-6678700IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-6683700IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MAAPAADDDD HRAALPREED DGEEEEGSEE EVESDDEEEE EGEGYDWSEE DDPEAASLAG  60
ICDPDAGSYD DPTFDPAADG DLEVDAVLRS RMARMSLSSA RKDRKGSRMP KMGKEEMDLL  120
AMVDKLMHDG QLEKLKVYEC KAYLRMHKLR LSGNKEVLLT RIRGQIEVKT MGEVKYPVSS  180
FVLNCQGDSC KGDVVVFEQN IYKRKKGAPR GVKGHLCGQR TNAGRIIKES YGTKKQQHTF  240
TIEILWSRGY KPWPPLHPLL IKGRNLYKDK TMRQPWLDEE ERNRALQEKH ARGYVARKTR  300
EVRIKDKENE RMRRLNRNKE NKSKGQDNMN KKSSQAVFPQ HTVTTNTVQK RAEKIIPSLQ  360
HGESGNSSQQ HLSSKQTPTE QLLHYLPQFP HPQQHNEVLL QKGTSRTSTT QLINHQAPSL  420
QHAVKVETTQ QQQQQQPPKS IKPAPIQQSS AYPQQYPKHQ HHNQALPRVP PSQEQRAAVS  480
QTSAARQDFT NHQAPPSRQH GGSENMRRQE ISSRPTPTPT PQQAVSYTQQ QPPNHQYRNE  540
AFWQQGGTST SRTGFMDRQS NNWGSTDHDK PAFQPFTQKA KTYQHGSNGS GHHQARVDRE  600
THQPLRSRNQ DYHWEDQSYH HQQNHHQNYY GHRQMSQDQY HHQQNHHQNY HGRQGMNGNQ  660
YHDRQNHNQN PQRFRPWKPC FIYQQQGWCP YGENCKFMHD LR*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.466880.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ338N2
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g25220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g25220
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
GenBankAC0917340.0AC091734.3 Genomic Sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0068A07, from Chromosome 10, complete sequence.
GenBankAC0799360.0AC079936.7 Oryza sativa Japonica Group chromosome X clone OSJNBb0061I18, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613634.10.0PREDICTED: zinc finger CCCH domain-containing protein 62
SwissprotQ338N20.0C3H62_ORYSJ; Zinc finger CCCH domain-containing protein 62
TrEMBLB8BGM90.0B8BGM9_ORYSI; Uncharacterized protein
STRINGBGIOSGA032003-PA0.0(Oryza sativa Indica Group)
STRINGLOC_Os10g25220.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP451266
MonocotsOGMP131072022
Publications ? help Back to Top
  1. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]