PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g25170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 323aa    MW: 34187.3 Da    PI: 5.2297
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g25170.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19118168256
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       +++GVr ++ +g+W+AeIrdp+    r  r++lg+f tae Aa+a++aa+++l+g+
  LOC_Os10g25170.1 118 RFRGVRKRP-WGKWAAEIRDPV----RgVRVWLGTFPTAESAARAYDAAARRLRGA 168
                       69*******.**********63....56**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.49E-15118152No hitNo description
PROSITE profilePS5103224.395118175IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-21118175IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.8E-31118176IPR001471AP2/ERF domain
SMARTSM003804.4E-35118181IPR001471AP2/ERF domain
PfamPF008474.7E-13118167IPR001471AP2/ERF domain
PRINTSPR003679.4E-11119130IPR001471AP2/ERF domain
PRINTSPR003679.4E-11141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MSQTQSNSNQ THLPTPNPSR ARAMCGGAIL ADLIPSPRSG GHTKKNKRRR ISDDEDFEAA  60
FEEFDAGDDD SDSDSESEEV DEYDVVVDDD DSEDGVVVLP PPPPPPPVIP HERHGARRFR  120
GVRKRPWGKW AAEIRDPVRG VRVWLGTFPT AESAARAYDA AARRLRGAKA KPNFPSAPPP  180
SAAAHRRKKR RAHAATRSPS SPPATSEVTA ASASASSDVP APAFASFVGE PGHGGAKSMP  240
TTSHTSQPAP PATVASENVD DPEVFDPYDV HGGLASYFAG GAYESLESLF AHGGDSAAVD  300
QAASDHWPAA LWSFADDGSF CF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-19119175663ATERF1
3gcc_A3e-19119175663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14650KRRRI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.566650.0leaf| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166334570.0
Expression AtlasQ338N5-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g25170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g25170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1102690.0AK110269.1 Oryza sativa Japonica Group cDNA clone:002-163-C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613362.10.0PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLQ338N50.0Q338N5_ORYSJ; AP2 domain containing protein, expressed
STRINGLOC_Os10g25170.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP151951415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-15ERF family protein