PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g23050.1
Common NameLOC4348490, Os10g0376900, OsJ_31307, OSJNBa0095C06.11, OSNPB_100376900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 329aa    MW: 34657 Da    PI: 7.1384
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g23050.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.75.7e-15109160155
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+++L+
  LOC_Os10g23050.1 109 QRMTHIAVERNRRRQMNEYLAVLRSLMPPS---YAQRGDQASIVGGAINYVRELE 160
                       79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-14107164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-15107164No hitNo description
PROSITE profilePS5088816.412108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-17108170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-12109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALEAVVYSH GGHFGGYGGG LMGGAPAAPW DVFAAAGGGG SWDDPGLFAA EASLDVIQGV  60
DEWEVDQDQH ASSSSKVAAR PPVKAAAAAG KRKRRRAKAA KNREEIESQR MTHIAVERNR  120
RRQMNEYLAV LRSLMPPSYA QRGDQASIVG GAINYVRELE QLLQTLEARR TIKDHIDGGA  180
GESPSPFAGF FAFPQYSTAT SGHGGGGDAH SRIVVKPAET TTTAAGGGAG AAIADIEASM  240
VEGHASVKVQ ARRRPRQLLK LVAGLHQLGL TTLHLNVTTV AAMAMYSFSL KVEDGCKLGS  300
VEEIATAVHE ILERMQEEQA FADAKTSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095KRKRRR
29195RKRRR
3109120RMTHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.466000.0panicle| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329688270.0
Expression AtlasQ7XF89-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g23050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g23050
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0588090.0AK058809.1 Oryza sativa Japonica Group cDNA clone:001-003-C09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613301.10.0PREDICTED: transcription factor bHLH96
SwissprotQ9C7T42e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLQ7XF890.0Q7XF89_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGLOC_Os10g23050.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
MonocotsOGMP74138156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-58bHLH family protein