PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g22600.1
Common NameLOC9270685, Os10g0371100, OSNPB_100371100
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 322aa    MW: 33784 Da    PI: 8.7234
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g22600.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-19123172255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+WvAeIr p++   r+r +lg+++tae+Aa a++ a+ +l+g
  LOC_Os10g22600.1 123 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEDAALAYDGAAFRLRG 172
                       59******9.**********955...5*************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.07E-28122182No hitNo description
PROSITE profilePS5103223.143123180IPR001471AP2/ERF domain
SuperFamilySSF541715.04E-22123181IPR016177DNA-binding domain
SMARTSM003807.3E-36123186IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-32123181IPR001471AP2/ERF domain
PfamPF008474.4E-13124172IPR001471AP2/ERF domain
PRINTSPR003671.2E-10124135IPR001471AP2/ERF domain
PRINTSPR003671.2E-10146162IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020039anatomyleaf lamina
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MDRQWRCLAA AASTSGNSKL PPLPMALGGA VEYGQLVHGA AAPVAPFFVD AEQQSLSPAT  60
AMVLGAGWYN YNLVTPSQAA QLHHRLRRAV GAAPCSMKRC GGMAAAAAGR LALVGPAPVQ  120
AKLYRGVRQR HWGKWVAEIR LPRNRTRLWL GTYDTAEDAA LAYDGAAFRL RGDAARLNFP  180
ELRRGGRHHA PALSASVDAK ILQATTTTTA DTAAAAAPAS TNTTPPPSPR VVKTEPGCCS  240
VSEASTTTTA DAADVSSTGS SPSPTSSNQA ATATPPAPRP PPPLPETIQQ LDFTEAPWDE  300
ADGFALRRYP SWEIDWDAIL S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20120180263ATERF1
3gcc_A2e-20120180263ATERF1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA0A0P0XUB4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g22600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g22600
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1345160.0AC134516.1 Oryza sativa Japonica Group chromosome 10 clone OJA1208D02, complete sequence.
GenBankAC1073140.0AC107314.1 Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone OJ1208D02 from chromosome 10, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613762.10.0PREDICTED: ethylene-responsive transcription factor RAP2-13
TrEMBLA0A0P0XUB40.0A0A0P0XUB4_ORYSJ; Os10g0371100 protein
STRINGLOC_Os10g22600.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
MonocotsOGMP38235203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22190.11e-29ERF family protein