PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g19270.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 281aa    MW: 30771.1 Da    PI: 6.8471
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g19270.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR140.21.1e-12151225190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ e+GF +r+ ks+++       +++f+  ++          + er +++++r+gC+a l +k+++d+ w+v++ + eHnH+l+
  LOC_Os10g19270.1 151 DFYNLYSFECGFGIRRGKSYTN-------TKQFRNWQQ-------LG-KPERANSSSSRCGCNALLYLKRTDDDGWYVAEHRAEHNHALS 225
                       6*****************9998.......334432222.......22.34556778********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.0E-8151225IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MDNPEIEHAA STPRGVIPST PPGAKIVAIA IADEPPPAPA RSDRVLGKRA RKDIAEGCSP  60
SPTATRAMRA GVDYSMEMHT GEFASDGVDD PQQCTPRRTP YGRAGTLALL YTPGRVTAME  120
QSMREYAIAH RGYVFDQRQG IEFDLLSEAY DFYNLYSFEC GFGIRRGKSY TNTKQFRNWQ  180
QLGKPERANS SSSRCGCNAL LYLKRTDDDG WYVAEHRAEH NHALSDSCGE KINWPSHSQI  240
DIHTKEEALS PHTETKAAAA EKGDPSGASA PLHRQNSTGV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.547764e-55callus| flower| panicle
Os.748154e-55callus| flower| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567649954e-55
GEO329758264e-55
Expression AtlasQ339Q6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g19270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g19270
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1617901e-140AC161790.1 Oryza sativa Japonica Group chromosome 10 clone OSJNBb0011F12, complete sequence.
GenBankAC0904821e-140AC090482.3 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0015I18, from chromosome 10, complete sequence.
GenBankAP0149661e-140AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLQ339Q60.0Q339Q6_ORYSJ; Retrotransposon protein, putative, Ty3-gypsy subclass, expressed
STRINGLOC_Os10g19270.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6191991
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.11e-09FAR1-related sequence 8