PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g17630.1
Common NameOs10g0323000, OsJ_31059, OSJNBa0065C16.16
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 273aa    MW: 30761 Da    PI: 10.0441
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g17630.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.2e-11561271895
                       --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                B3  18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                       lp + +++++g    +k ltl +++++  +v+l  +k++++++++kGWk+Fv+  +L++g  v F++++ s+  l + 
  LOC_Os10g17630.1  56 LPPEIVARCNGH--DGKHLTLVTRNSKPVNVRL--EKRGQSFYISKGWKKFVELTDLRVGQCVRFSVSSPST--LDLL 127
                       677777777655..4568***************..*******************************654333..4444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.49E-1452132IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.5E-1355132IPR015300DNA-binding pseudobarrel domain
PfamPF023627.8E-956124IPR003340B3 DNA binding domain
PROSITE profilePS508639.26356132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.8E-6195268IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-11195269IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.161236272IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009030anatomycarpel
PO:0007130developmental stagesporophyte reproductive stage
PO:0007606developmental stagegynoecium development stage
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MVPDQDGELR HDVCSLSTSL RLTAHVTSSI VHEQSSNIRY GENRKHGQRY AYHEPLPPEI  60
VARCNGHDGK HLTLVTRNSK PVNVRLEKRG QSFYISKGWK KFVELTDLRV GQCVRFSVSS  120
PSTLDLLILD KHGTSLAIPP SKRDLKLKSK RSTHQDSKGH PSNTDPGPSR IINRRVTKSE  180
SSANTQLLVQ YFSKRYPIDH LEQLMTGRTE DIEVQTLVGP SVNMVLHTST DHRCNLKKGW  240
TDFALSNGIK LNTVCIFHFY KTTHLGVIVD IF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.235700.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1166334280.0
Expression AtlasQ7XFU9-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g17630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g17630
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8332320.0CT833232.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA237C07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620843.13e-51PREDICTED: B3 domain-containing protein Os10g0323000-like
SwissprotQ7XFU90.0Y1030_ORYSJ; B3 domain-containing protein Os10g0323000
TrEMBLI1QTD80.0I1QTD8_ORYGL; Uncharacterized protein
STRINGLOC_Os10g17630.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1831033