PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os10g14040.1
Common NameOSJNBa0014J14.15
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family FAR1
Protein Properties Length: 621aa    MW: 71057.4 Da    PI: 6.1799
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os10g14040.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR151.63.1e-1666140175
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgk 75 
                       kfY  YAk  GFsvrk+k k++  +gei++r+fvCs+eg+ e ++ +  +++ ++r  tr+gC akl++++++ +gk
  LOC_Os10g14040.1  66 KFYLGYAKGKGFSVRKNKLKRK--DGEIIWRQFVCSCEGHMELKHFErIDRKMEPRDLTRCGCLAKLEIELNEeKGK 140
                       6****************99988..9*****************999885678889*****************985555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1466138IPR004330FAR1 DNA binding domain
Gene3DG3DSA:3.40.50.20002.7E-25522594No hitNo description
SuperFamilySSF537569.42E-19522594No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MRITQVIATS VILGLLWWHS DPSTPKGLQD QVRSDIMNSS YLSLEDQEEY KMMGNVVFSS  60
EDEGYKFYLG YAKGKGFSVR KNKLKRKDGE IIWRQFVCSC EGHMELKHFE RIDRKMEPRD  120
LTRCGCLAKL EIELNEEKGK AQAVELRMSG LRPFQIMEVM ENNHDELDEV GFVMKDLYNF  180
FTQYKMKNIK GRDAEDVFKY LTKKQEKDAE FFFKYTTDEE WHLRNVFWAD AESRIDYAAF  240
GGIVIFDSTY CANKIDADPL EKDATHIYTA VMLKKIRAWI RLIVGLEFIS GTNQDGSTLY  300
VVGLKEDNEV WDEVRVTFKG QALPGVKCHF LKMDCEDIPC SHIFVVLKFL GFDIIPRCCV  360
VDRWTMGATA AFRSDKNNDP NVWSEHMVRY RSLRNMGSDA FFEAARKLEQ TKNVMDFLNG  420
VLDKGSASHE NIVAADFGPM PTHFLSSNQP LEKRVLDPDE IRAKEAPSKR QRPFRVEPAS  480
TYPNLGMSPE WYGSLEWVFP EVQYSSMCIK IAISTGGHAC FGDPGFEGWM RSIESEYKDK  540
FRGWVGFTVL VSHRITACCD ILLMSSRFEP CGLNQLYAMQ YGIVPVVHGT GGLRVKNQEG  600
VANFDDILAK SVAFMVARVD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hln_A4e-35522594478550Starch synthase I
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987RKNKLKRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.801530.0root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2976024520.0
Expression AtlasQ8S6V4-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os10g14040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs10g14040
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0921720.0AC092172.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0014J14, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611098.11e-128PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLQ8S6V40.0Q8S6V4_ORYSJ; Putative transposase
STRINGLOC_Os10g14040.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3012351
MonocotsOGMP2646122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-22FAR1-related sequence 5